Standard name | |
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Human Ortholog | |
Description | Protein involved in transcription initiation; acts at TATA-containing promoters; associates with the basal transcription factor TFIID; contains two bromodomains; corresponds to the C-terminal region of mammalian TAF1; redundant with Bdf1p; protein abundance increases in response to DNA replication stress; BDF2 has a paralog, BDF1, that arose from the whole genome duplication |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | – | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | – | 0 | 0 | 0 | 0 | – | 1 | 1 | 2 | 2 | 0 | 0 | 0 | 0 | 1 | 0 | 2 | 4 | 2 | 6 | 10 | 9 |
Bud Neck | 0 | 0 | – | 0 | 0 | 0 | 0 | – | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
Bud Site | 0 | 0 | – | 0 | 0 | 0 | 3 | – | 3 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 0 | 0 | – | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 5 | 10 | – | 1 | 9 | 16 | 34 | – | 15 | 18 | 19 | 22 | 5 | 35 | 42 | 29 | 25 | 30 | 1 | 4 | 2 | 11 | 12 | 15 |
Endoplasmic Reticulum | 0 | 0 | – | 0 | 0 | 0 | 0 | – | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 10 | 4 | 5 | 0 | 0 | 0 | 0 | 1 | 0 |
Endosome | 0 | 3 | – | 1 | 2 | 4 | 7 | – | 4 | 1 | 0 | 2 | 0 | 2 | 3 | 4 | 2 | 7 | 2 | 0 | 0 | 0 | 4 | 3 |
Golgi | 0 | 0 | – | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 5 | 3 | 5 | 0 | 1 | 1 | 1 | 0 | 0 |
Mitochondria | 10 | 1 | – | 1 | 2 | 9 | 18 | – | 29 | 30 | 64 | 51 | 0 | 0 | 0 | 2 | 1 | 2 | 0 | 0 | 0 | 0 | 3 | 0 |
Nucleus | 42 | 200 | – | 16 | 99 | 98 | 92 | – | 72 | 78 | 68 | 81 | 87 | 172 | 123 | 135 | 137 | 96 | 54 | 209 | 30 | 85 | 121 | 139 |
Nuclear Periphery | 0 | 0 | – | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 2 | 6 | – | 0 | 2 | 2 | 4 | – | 4 | 1 | 2 | 1 | 16 | 4 | 1 | 3 | 9 | 8 | 3 | 5 | 1 | 3 | 9 | 12 |
Peroxisomes | 0 | 0 | – | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | – | 0 | 0 | 0 | 0 | – | 4 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 2 | 1 | 7 | 12 | 15 |
Vac/Vac Membrane | 3 | 27 | – | 0 | 8 | 17 | 18 | – | 12 | 11 | 16 | 17 | 2 | 10 | 13 | 33 | 22 | 24 | 6 | 13 | 9 | 11 | 23 | 29 |
Unique Cell Count | 53 | 227 | 19 | 118 | 137 | 150 | 121 | 131 | 133 | 147 | 102 | 218 | 173 | 203 | 194 | 167 | 73 | 245 | 52 | 131 | 205 | 232 | ||
Labelled Cell Count | 62 | 247 | 19 | 122 | 146 | 176 | 144 | 147 | 174 | 176 | 110 | 223 | 182 | 221 | 204 | 179 | 73 | 245 | 52 | 131 | 205 | 232 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 5.2 | 8.2 | – | 8.6 | 8.7 | 6.8 | 6.6 | – | 6.0 | 5.8 | 5.2 | 5.3 | 8.2 | 8.9 | 7.7 | 14.0 | 15.2 | 13.8 | 6.3 | 6.5 | 7.1 |
Std Deviation (1e-4) | 0.9 | 1.4 | – | 4.4 | 2.3 | 1.9 | 1.6 | – | 2.1 | 2.0 | 1.4 | 1.6 | 1.8 | 2.4 | 1.7 | 4.7 | 4.3 | 3.9 | 0.8 | 1.2 | 1.2 |
Intensity Change (Log2) | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Actin | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Bud | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Bud Neck | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Bud Site | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cell Periphery | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cyto | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Endoplasmic Reticulum | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Endosome | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Golgi | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Mitochondria | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nuclear Periphery | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nuc | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nucleolus | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Peroxisomes | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
SpindlePole | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Vac | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cortical Patches | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cytoplasm | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nucleus | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Vacuole | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 3.838 | 4.9451 | 4.6461 | 4.7246 | 3.3285 | 4.9212 | 4.7789 | 6.0958 | 5.2145 | 4.9003 | 3.612 | 5.4086 | 4.7578 | 6.3582 | 5.6687 | 4.4324 | 4.8895 | 5.6805 |
Actin | 0.0186 | 0.0002 | 0.002 | 0.0001 | 0.0522 | 0.0011 | 0.0085 | 0.0067 | 0 | 0.003 | 0.0098 | 0.0004 | 0.0425 | 0.0005 | 0.0042 | 0.0126 | 0.0462 | 0.003 |
Bud | 0.0005 | 0 | 0.0003 | 0 | 0.0013 | 0.0001 | 0.0009 | 0.0001 | 0.0001 | 0.0001 | 0.0012 | 0.0001 | 0.0009 | 0.0007 | 0.0002 | 0.0004 | 0.0039 | 0.0002 |
Bud Neck | 0.0047 | 0.0001 | 0.0004 | 0.0001 | 0.0027 | 0.0018 | 0.0013 | 0.0006 | 0.0001 | 0.0001 | 0.0022 | 0.0012 | 0.0015 | 0.0004 | 0.0004 | 0.0012 | 0.0051 | 0.0013 |
Bud Periphery | 0.0009 | 0 | 0.0007 | 0 | 0.0015 | 0.0001 | 0.0024 | 0.0001 | 0.0001 | 0.0001 | 0.006 | 0.0001 | 0.0027 | 0.0008 | 0.0003 | 0.0005 | 0.0068 | 0.0003 |
Bud Site | 0.0042 | 0.0001 | 0.0016 | 0 | 0.0133 | 0.0001 | 0.0027 | 0.0101 | 0.0002 | 0.0001 | 0.0027 | 0.0001 | 0.0019 | 0.0026 | 0.0014 | 0.0011 | 0.0088 | 0.0002 |
Cell Periphery | 0.0006 | 0 | 0.0001 | 0 | 0.0004 | 0 | 0.0005 | 0.0005 | 0 | 0 | 0.0027 | 0 | 0.001 | 0.0002 | 0.0001 | 0.0001 | 0.0017 | 0.0001 |
Cytoplasm | 0.0084 | 0.0001 | 0.0015 | 0.0005 | 0.0015 | 0.0001 | 0.0099 | 0.0008 | 0.0003 | 0.0015 | 0.0017 | 0.0003 | 0.01 | 0.0021 | 0.002 | 0.0027 | 0.0076 | 0.0005 |
Cytoplasmic Foci | 0.0279 | 0.001 | 0.0042 | 0 | 0.0187 | 0.0007 | 0.0085 | 0.0002 | 0.0029 | 0.011 | 0.0412 | 0.0003 | 0.0098 | 0.0005 | 0.0051 | 0.0313 | 0.0149 | 0.0035 |
Eisosomes | 0.0002 | 0 | 0.0001 | 0 | 0.0003 | 0 | 0.0001 | 0.0003 | 0 | 0 | 0.0004 | 0 | 0.0002 | 0 | 0.0001 | 0.0001 | 0.0004 | 0.0001 |
Endoplasmic Reticulum | 0.002 | 0 | 0.0013 | 0 | 0.0005 | 0.0002 | 0.0018 | 0.0003 | 0.0001 | 0.0033 | 0.0039 | 0.0001 | 0.0034 | 0.0003 | 0.0059 | 0.0005 | 0.0054 | 0.0007 |
Endosome | 0.017 | 0.0019 | 0.0086 | 0 | 0.0172 | 0.0046 | 0.0059 | 0.0002 | 0.0058 | 0.0159 | 0.0172 | 0.0033 | 0.0201 | 0.0012 | 0.0107 | 0.0253 | 0.0317 | 0.0106 |
Golgi | 0.0105 | 0.0033 | 0.0039 | 0 | 0.0208 | 0.002 | 0.0023 | 0.0003 | 0.0012 | 0.003 | 0.0109 | 0.0062 | 0.0141 | 0.0004 | 0.0025 | 0.0532 | 0.0328 | 0.0086 |
Lipid Particles | 0.0264 | 0.0006 | 0.0061 | 0 | 0.0292 | 0.003 | 0.0034 | 0.0001 | 0.0005 | 0.0166 | 0.0485 | 0.0001 | 0.013 | 0.0001 | 0.0065 | 0.0504 | 0.0068 | 0.0039 |
Mitochondria | 0.0084 | 0.007 | 0.0042 | 0 | 0.0095 | 0.0008 | 0.0065 | 0.0004 | 0.0002 | 0.0009 | 0.0857 | 0.0014 | 0.0281 | 0.0025 | 0.0008 | 0.0245 | 0.025 | 0.0134 |
None | 0.0045 | 0 | 0.0005 | 0 | 0.0006 | 0.0001 | 0.002 | 0.0001 | 0.0001 | 0.0007 | 0.0048 | 0.0002 | 0.0029 | 0.0003 | 0.0012 | 0.0003 | 0.0011 | 0.0014 |
Nuclear Periphery | 0.0077 | 0.0007 | 0.0026 | 0.0054 | 0.0028 | 0.0018 | 0.0105 | 0.0007 | 0.0006 | 0.0511 | 0.0047 | 0.0007 | 0.0116 | 0.0021 | 0.0019 | 0.0042 | 0.0131 | 0.0015 |
Nucleolus | 0.0156 | 0.0068 | 0.0092 | 0.0032 | 0.0486 | 0.0247 | 0.0154 | 0.0069 | 0.0097 | 0.0024 | 0.0387 | 0.0195 | 0.0306 | 0.0132 | 0.004 | 0.0036 | 0.0356 | 0.0205 |
Nucleus | 0.8015 | 0.9767 | 0.9484 | 0.9728 | 0.7474 | 0.9573 | 0.8901 | 0.971 | 0.9753 | 0.8696 | 0.6772 | 0.9604 | 0.7778 | 0.9683 | 0.9456 | 0.7471 | 0.7279 | 0.9236 |
Peroxisomes | 0.0155 | 0.0009 | 0.002 | 0 | 0.0231 | 0.0004 | 0.0046 | 0.0001 | 0.0003 | 0.0028 | 0.0229 | 0 | 0.0125 | 0.0001 | 0.0044 | 0.0264 | 0.0053 | 0.0014 |
Punctate Nuclear | 0.012 | 0.0002 | 0.0014 | 0.0177 | 0.0042 | 0.0008 | 0.0129 | 0.0003 | 0.0019 | 0.0136 | 0.0087 | 0.0055 | 0.005 | 0.0008 | 0.0019 | 0.0129 | 0.0028 | 0.0039 |
Vacuole | 0.0098 | 0.0001 | 0.0007 | 0 | 0.0032 | 0.0003 | 0.0071 | 0.0001 | 0.0006 | 0.0016 | 0.0059 | 0.0002 | 0.0072 | 0.0022 | 0.0006 | 0.0009 | 0.0135 | 0.0005 |
Vacuole Periphery | 0.0034 | 0.0001 | 0.0004 | 0 | 0.0012 | 0.0002 | 0.0028 | 0 | 0.0001 | 0.0025 | 0.0029 | 0.0001 | 0.0032 | 0.0006 | 0.0003 | 0.0007 | 0.0035 | 0.0009 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 47.1983 | 60.2014 | 53.0719 | 46.7214 | 53.3588 | 54.6507 | 65.1616 | 65.4867 | 55.5368 | 63.3445 |
Translational Efficiency | 1.1466 | 0.8629 | 0.7494 | 0.7356 | 0.8259 | 1.1391 | 0.8176 | 0.7067 | 0.7662 | 0.6969 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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