Standard name | |
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Human Ortholog | |
Description | Ribosomal RNA processing element (RRPE)-binding protein; involved in the glucose-induced transition from quiescence to growth; restricted to nucleus in quiescent cells, released into cytoplasm after glucose repletion; binds Sin3p; relative distribution to the nucleus increases upon DNA replication stress |
ensLOC | DeepLoc | |||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 1 | 0 | 0 | 2 |
Bud | 0 | 1 | 4 | 0 | 0 | 1 | 0 | 1 | 2 | 0 | 2 | 3 | 1 | 0 | 1 | 0 | 0 | 0 | 5 | 3 | 11 | 9 | 5 | 4 |
Bud Neck | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 3 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 2 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 4 | 1 | 4 | 9 | 8 | 10 | 12 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 0 | 9 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 17 | 11 | 7 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 80 | 338 | 157 | 12 | 17 | 19 | 27 | 35 | 9 | 16 | 9 | 10 | 39 | 56 | 67 | 400 | 240 | 151 | 65 | 333 | 151 | 71 | 252 | 206 |
Endoplasmic Reticulum | 0 | 6 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 12 | 16 | 7 | 0 | 1 | 3 | 0 | 0 | 4 |
Endosome | 2 | 5 | 13 | 1 | 2 | 2 | 1 | 3 | 0 | 0 | 0 | 0 | 10 | 9 | 12 | 2 | 0 | 2 | 6 | 8 | 9 | 7 | 4 | 3 |
Golgi | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 2 | 0 | 0 | 0 |
Mitochondria | 5 | 1 | 8 | 7 | 11 | 107 | 101 | 114 | 117 | 150 | 106 | 147 | 4 | 1 | 1 | 10 | 0 | 1 | 0 | 2 | 1 | 0 | 1 | 5 |
Nucleus | 9 | 12 | 24 | 129 | 190 | 246 | 238 | 354 | 204 | 245 | 193 | 196 | 150 | 250 | 267 | 14 | 13 | 4 | 11 | 19 | 31 | 13 | 7 | 6 |
Nuclear Periphery | 0 | 1 | 0 | 1 | 0 | 1 | 3 | 5 | 2 | 2 | 9 | 7 | 0 | 2 | 1 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 |
Nucleolus | 3 | 0 | 2 | 29 | 30 | 73 | 84 | 144 | 96 | 144 | 108 | 113 | 13 | 32 | 33 | 0 | 0 | 0 | 10 | 4 | 13 | 4 | 3 | 5 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 6 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 2 | 0 | 3 | 0 | 5 | 1 | 0 | 0 | 9 | 7 | 10 | 5 | 7 | 3 |
Vac/Vac Membrane | 10 | 32 | 29 | 2 | 6 | 11 | 4 | 7 | 1 | 5 | 3 | 3 | 27 | 18 | 9 | 15 | 17 | 8 | 1 | 10 | 14 | 3 | 5 | 10 |
Unique Cell Count | 105 | 384 | 225 | 150 | 231 | 345 | 369 | 528 | 301 | 395 | 300 | 331 | 232 | 341 | 367 | 428 | 258 | 162 | 114 | 404 | 261 | 120 | 296 | 260 |
Labelled Cell Count | 109 | 406 | 241 | 182 | 256 | 464 | 460 | 668 | 442 | 573 | 444 | 492 | 250 | 370 | 402 | 472 | 297 | 180 | 114 | 404 | 261 | 120 | 296 | 260 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 6.2 | 7.3 | 6.6 | 7.1 | 6.8 | 5.9 | 5.6 | 6.1 | 5.6 | 5.3 | 5.6 | 5.4 | 7.9 | 7.8 | 7.4 | 8.8 | 9.9 | 9.8 | 7.4 | 7.0 | 8.0 |
Std Deviation (1e-4) | 0.7 | 0.9 | 1.1 | 2.5 | 1.7 | 1.7 | 1.5 | 1.6 | 1.4 | 1.5 | 1.5 | 1.5 | 1.5 | 1.7 | 1.9 | 1.5 | 1.6 | 1.8 | 1.6 | 1.1 | 1.3 |
Intensity Change (Log2) | – | – | – | 0.11 | 0.04 | -0.17 | -0.23 | -0.12 | -0.23 | -0.31 | -0.24 | -0.3 | 0.26 | 0.25 | 0.17 | 0.41 | 0.59 | 0.58 | 0.16 | 0.08 | 0.28 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2.6 | 2.7 | 0 |
Cytoplasm | -11.8 | -13.7 | -16.2 | -16.0 | -18.2 | -16.3 | -17.5 | -16.3 | -16.9 | -11.4 | -12.8 | -12.5 | 8.1 | 6.7 | 5.6 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3.1 | 0 |
Endosome | -2.6 | -2.9 | -3.8 | -4.3 | 0 | -4.2 | 0 | -4.2 | -4.4 | -0.7 | -1.9 | -1.5 | -4.3 | -3.9 | -2.3 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 0.5 | 0.6 | 8.0 | 7.3 | 6.1 | 9.4 | 9.5 | 8.7 | 10.5 | -1.2 | 0 | 0 | -0.9 | 0 | 0 |
Nucleus | 14.5 | 15.3 | 14.2 | 12.8 | 14.2 | 13.1 | 12.4 | 12.4 | 11.5 | 11.9 | 14.6 | 14.7 | -3.8 | -2.3 | -3.1 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 6.4 | 5.1 | 7.0 | 7.3 | 8.4 | 9.0 | 10.0 | 9.8 | 9.5 | 2.8 | 4.2 | 4.1 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | -4.0 | -4.1 | -4.4 | -6.1 | -6.8 | -6.1 | -6.1 | -5.6 | -6.0 | -0.4 | -3.2 | -5.0 | -4.5 | -2.4 | -2.6 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 2.3678 | 3.5678 | 2.8588 | 2.9833 | 2.0452 | 2.7668 | 5.4454 | 5.9954 | 5.6445 | 4.9102 | 5.2685 | 5.6238 | 5.4565 | 6.5504 | 5.9371 | 5.7247 | 5.835 | 5.8685 |
Actin | 0.0406 | 0.0008 | 0.02 | 0.0016 | 0.005 | 0.0052 | 0.0095 | 0.0034 | 0.0054 | 0.0437 | 0.0067 | 0.0042 | 0.0778 | 0.0016 | 0.0323 | 0.0103 | 0.0634 | 0.0077 |
Bud | 0.0003 | 0.0002 | 0.0004 | 0.0023 | 0.001 | 0.0054 | 0.0047 | 0.0059 | 0.0042 | 0.0033 | 0.0026 | 0.0051 | 0.0033 | 0.0059 | 0.0053 | 0.0065 | 0.0029 | 0.0046 |
Bud Neck | 0.0014 | 0.0004 | 0.0014 | 0.0012 | 0.0039 | 0.0102 | 0.0053 | 0.0025 | 0.0022 | 0.0049 | 0.0038 | 0.0104 | 0.0022 | 0.0033 | 0.0034 | 0.023 | 0.0023 | 0.0058 |
Bud Periphery | 0.0004 | 0.0001 | 0.0004 | 0.0019 | 0.0014 | 0.0062 | 0.0053 | 0.0028 | 0.0031 | 0.0081 | 0.0023 | 0.0053 | 0.0046 | 0.0036 | 0.0052 | 0.013 | 0.0017 | 0.0063 |
Bud Site | 0.0028 | 0.0015 | 0.0009 | 0.0013 | 0.0348 | 0.0029 | 0.0157 | 0.0384 | 0.0105 | 0.0051 | 0.0028 | 0.0028 | 0.0084 | 0.0173 | 0.0188 | 0.0043 | 0.0015 | 0.0028 |
Cell Periphery | 0.0004 | 0.0004 | 0.0003 | 0.0001 | 0.0007 | 0.0005 | 0.0009 | 0.0004 | 0.0002 | 0.001 | 0.0001 | 0.0003 | 0.0014 | 0.0004 | 0.0006 | 0.0009 | 0.0002 | 0.0004 |
Cytoplasm | 0.632 | 0.788 | 0.7129 | 0.7549 | 0.6314 | 0.7238 | 0.4879 | 0.5034 | 0.4207 | 0.3323 | 0.4876 | 0.5102 | 0.3955 | 0.5655 | 0.4978 | 0.4445 | 0.375 | 0.6815 |
Cytoplasmic Foci | 0.0224 | 0.0035 | 0.0106 | 0.0078 | 0.0121 | 0.0073 | 0.0225 | 0.0141 | 0.0194 | 0.03 | 0.0452 | 0.0156 | 0.019 | 0.0114 | 0.0185 | 0.0294 | 0.0236 | 0.0108 |
Eisosomes | 0.0007 | 0 | 0.0001 | 0 | 0.0002 | 0.0001 | 0.0001 | 0 | 0 | 0.0003 | 0 | 0 | 0.0023 | 0.0001 | 0.0002 | 0.0001 | 0.0002 | 0.0001 |
Endoplasmic Reticulum | 0.0169 | 0.0041 | 0.0105 | 0.0048 | 0.0041 | 0.0048 | 0.0079 | 0.0023 | 0.0032 | 0.0029 | 0.0029 | 0.0045 | 0.0194 | 0.0028 | 0.0054 | 0.0041 | 0.0078 | 0.0057 |
Endosome | 0.0276 | 0.0022 | 0.0138 | 0.0222 | 0.0232 | 0.0081 | 0.0335 | 0.0073 | 0.0155 | 0.0304 | 0.03 | 0.011 | 0.0442 | 0.0027 | 0.0181 | 0.0203 | 0.0171 | 0.0102 |
Golgi | 0.0048 | 0.0004 | 0.0054 | 0.0014 | 0.0052 | 0.0008 | 0.011 | 0.0017 | 0.005 | 0.0145 | 0.0098 | 0.0021 | 0.0181 | 0.0004 | 0.0081 | 0.0159 | 0.0154 | 0.0026 |
Lipid Particles | 0.0065 | 0.0002 | 0.0024 | 0.0008 | 0.0362 | 0.0033 | 0.003 | 0.0004 | 0.0041 | 0.0019 | 0.0024 | 0.0013 | 0.0164 | 0.0004 | 0.003 | 0.0042 | 0.0095 | 0.0024 |
Mitochondria | 0.0089 | 0.0002 | 0.0014 | 0.0053 | 0.0068 | 0.0008 | 0.0059 | 0.0012 | 0.0028 | 0.0136 | 0.0054 | 0.0025 | 0.0321 | 0.0008 | 0.0043 | 0.0402 | 0.0681 | 0.0058 |
None | 0.0547 | 0.0382 | 0.0497 | 0.015 | 0.0059 | 0.0284 | 0.0321 | 0.0355 | 0.0435 | 0.0573 | 0.0417 | 0.0365 | 0.088 | 0.0966 | 0.0769 | 0.0166 | 0.0213 | 0.0467 |
Nuclear Periphery | 0.0192 | 0.0049 | 0.0063 | 0.0078 | 0.0059 | 0.0048 | 0.0136 | 0.0045 | 0.006 | 0.0055 | 0.0065 | 0.005 | 0.0179 | 0.0078 | 0.008 | 0.0066 | 0.0184 | 0.0062 |
Nucleolus | 0.0018 | 0.0016 | 0.0034 | 0.0033 | 0.0076 | 0.0032 | 0.004 | 0.0045 | 0.0035 | 0.0038 | 0.0055 | 0.0066 | 0.0025 | 0.0039 | 0.0035 | 0.0035 | 0.0048 | 0.0024 |
Nucleus | 0.1176 | 0.1465 | 0.1534 | 0.1168 | 0.1929 | 0.1667 | 0.3016 | 0.3522 | 0.4194 | 0.4058 | 0.2958 | 0.3509 | 0.2126 | 0.2591 | 0.2642 | 0.3116 | 0.2392 | 0.174 |
Peroxisomes | 0.0039 | 0.0001 | 0.0005 | 0.0004 | 0.0036 | 0.003 | 0.005 | 0.0016 | 0.0101 | 0.0117 | 0.0172 | 0.0062 | 0.0118 | 0.004 | 0.0077 | 0.0182 | 0.0631 | 0.0006 |
Punctate Nuclear | 0.0313 | 0.0039 | 0.0026 | 0.0411 | 0.0112 | 0.0025 | 0.0152 | 0.0114 | 0.0151 | 0.0097 | 0.0274 | 0.0128 | 0.0068 | 0.0079 | 0.0118 | 0.0057 | 0.0585 | 0.0181 |
Vacuole | 0.0045 | 0.0027 | 0.0029 | 0.0075 | 0.0056 | 0.0111 | 0.0133 | 0.0061 | 0.0053 | 0.0123 | 0.0037 | 0.006 | 0.0127 | 0.004 | 0.006 | 0.0187 | 0.0048 | 0.0045 |
Vacuole Periphery | 0.0012 | 0.0002 | 0.0005 | 0.0026 | 0.0012 | 0.001 | 0.002 | 0.0005 | 0.0007 | 0.0022 | 0.0006 | 0.0008 | 0.0031 | 0.0005 | 0.0011 | 0.0026 | 0.0012 | 0.0007 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 10.7335 | 8.3158 | 8.544 | 14.2075 | 9.2776 | 9.2972 | 14.3907 | 14.6237 | 15.153 | 17.7661 |
Translational Efficiency | 2.0559 | 2.0552 | 1.9011 | 1.3551 | 1.9905 | 3.5327 | 1.4987 | 1.3225 | 1.6509 | 1.3235 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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