Standard name
Human Ortholog
Description Small plasma membrane protein; confers resistance to amphotericin B and is a potential target of this common antifungal drug; related to a family of plant polypeptides that are overexpressed under high salt concentration or low temperature; not essential for viability; deletion causes hyperpolarization of the plasma membrane potential

Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 0.97 0.99 0.95 0.95 0.81 0.7 0.82 0.83 0.69 0.72 0.81 0.72
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0 0 0.07 0.14 0.35 0.52 0.07 0 0.15 0.06 0 0
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0 0 0 0 0 0 0 0 0 0.06 0 0.06
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 1 0 1 0 0 0 4 3 1 2 0 3
Bud 0 1 1 1 6 9 3 3 2 0 3 2
Bud Neck 3 1 3 3 7 1 2 1 0 0 0 0
Bud Site 0 0 0 0 1 5
Cell Periphery 3 2 3 0 1 2 1 0 2 1 0 0
Cytoplasm 355 273 157 211 306 271 319 237 157 94 110 93
Endoplasmic Reticulum 0 0 0 0 0 2 0 0 2 5 1 3
Endosome 1 1 0 0 1 1 6 3 5 4 1 3
Golgi 2 0 0 0 0 0 3 1 1 1 2 1
Mitochondria 7 3 12 32 132 200 27 12 34 8 2 4
Nucleus 1 0 0 1 0 1 0 0 0 0 1 1
Nuclear Periphery 0 0 1 0 1 0 0 0 0 0 1 0
Nucleolus 0 0 0 0 1 0 0 1 0 0 0 0
Peroxisomes 0 0 0 0 1 0 0 0 0 0 0 0
SpindlePole 2 0 1 0 7 12 6 5 4 0 1 2
Vac/Vac Membrane 1 0 1 0 0 2 7 8 4 7 4 7
Unique Cell Count 365 276 165 223 377 385 391 287 230 131 136 130
Labelled Cell Count 376 281 180 248 464 506 391 287 230 131 136 130


Ambiguous

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 3.9 3.8 3.2 3.2 2.5 2.5 4.5 4.7 4.5
Std Deviation (1e-4) 0.8 1.0 1.2 1.5 1.3 1.3 1.0 1.3 1.3
Intensity Change (Log2) -0.03 -0.37 -0.39 0.48 0.54 0.49


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Actin
Bud
Bud Neck
Bud Site
Cell Periphery
Cyto
Endoplasmic Reticulum
Endosome
Golgi
Mitochondria
Nuclear Periphery
Nuc
Nucleolus
Peroxisomes
SpindlePole
Vac
Cortical Patches
Cytoplasm
Nucleus
Vacuole

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration
Actin 0.0058 0.0002 0.0001 0.0002 0.0002 0.0004 0.0139 0 0.0004 0.0001 0.004 0.005
Bud 0.0091 0.0067 0.0053 0.0149 0.0021 0.0065 0.0018 0.0001 0.0009 0.0001 0.0004 0.0006
Bud Neck 0.0028 0.0015 0.0012 0.0107 0.0001 0.0017 0.0015 0 0.0022 0.0001 0.0005 0.0003
Bud Periphery 0.0038 0.001 0.0011 0.0034 0.0018 0.0034 0.0071 0 0.0026 0.0001 0.001 0.0023
Bud Site 0.0071 0.018 0.0103 0.0197 0.0007 0.0014 0.0021 0.001 0.0053 0.0001 0.0002 0.0001
Cell Periphery 0.0006 0.0001 0.0002 0.0008 0.0001 0.0004 0.0009 0 0.0001 0.0001 0.0001 0.0001
Cytoplasm 0.0142 0.0231 0.0091 0.0172 0.0077 0.0185 0.0182 0.011 0.0137 0.0145 0.0258 0.0228
Cytoplasmic Foci 0.0132 0.003 0.0024 0.0043 0.0018 0.0096 0.0067 0.0006 0.0015 0.0014 0.0013 0.0017
Eisosomes 0.0002 0.0001 0.0001 0.0001 0.0001 0.0001 0.0004 0.0001 0.0002 0.0002 0.0001 0.0001
Endoplasmic Reticulum 0.0006 0.0003 0.0002 0.0004 0.0001 0.0003 0.0019 0.0001 0.0002 0.0002 0.004 0.0009
Endosome 0.0021 0.0004 0.0002 0.0001 0 0.0001 0.0016 0 0.0001 0.0001 0.0013 0.0004
Golgi 0.0008 0.0001 0 0 0 0 0.0013 0 0.0001 0 0.0001 0.0003
Lipid Particles 0.0024 0.0001 0.0001 0.0003 0.0001 0.0002 0.0015 0 0.0001 0.0001 0.0001 0.0004
Mitochondria 0.002 0.0002 0.0003 0.0003 0.0002 0.0006 0.0009 0 0.0002 0.0002 0.0004 0.0002
None 0.9227 0.9353 0.9653 0.9051 0.9823 0.9498 0.9317 0.9782 0.9697 0.982 0.9522 0.9615
Nuclear Periphery 0.0021 0.0002 0.0002 0.0009 0.0001 0.0002 0.0009 0.0001 0.0002 0.0001 0.0038 0.0008
Nucleolus 0.001 0.0007 0.0006 0.0016 0.0002 0.0009 0.001 0.0003 0.0002 0.0001 0.0001 0.0002
Nucleus 0.002 0.004 0.0015 0.0069 0.0006 0.0027 0.001 0.0016 0.0006 0.0002 0.0031 0.0006
Peroxisomes 0.0016 0.0001 0.0001 0.0001 0.0001 0.0001 0.0019 0 0.0002 0.0001 0.0001 0.0004
Punctate Nuclear 0.0036 0.0046 0.0014 0.0111 0.0016 0.0023 0.0026 0.0068 0.0013 0.0002 0.0005 0.0011
Vacuole 0.0019 0.0002 0.0003 0.0014 0.0001 0.0005 0.0009 0 0.0001 0.0001 0.0007 0.0002
Vacuole Periphery 0.0004 0 0.0001 0.0003 0 0.0001 0.0002 0 0 0 0.0003 0.0001

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 338.246 410.9901 431.3181 647.5978 391.7152 229.7487 553.5741 671.1231 542.7358 543.3263
Translational Efficiency 2.5776 2.8264 3.2378 1.7609 2.7107 6.8497 3.2419 2.4498 3.6176 2.7514

Hit Data

Dataset Hit
Protein Concentration
Protein Localization
Gene Expression
Translational Efficiency

Micrographs

Cell Count

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
155 1880 1791 1279 1708 1886 130 1769 1863 3766 1921 3048

Protein Abundance

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Mean 645.66 700.37 741.59 796.44 644.91 664.84 846.66 800.59 644.97 682.58 748.70 798.85
Standard Deviation 63.28 82.21 83.62 116.59 70.47 80.14 97.45 141.61 69.90 83.10 88.65 131.70
Intensity Change Log 2 0.117343 0.199847 0.302791 0.043909 0.392685 0.311966 0.081114 0.299430 0.307383

Localization Score (DeepLoc)

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Actin 0.000057 0.000500 0.000075 0.000681 0.000079 0.000500 0.000266 0.000461 0.000077 0.000500 0.000087 0.000553
Bud Neck 0.018879 0.042848 0.002110 0.007465 0.013272 0.053195 0.000705 0.010303 0.013739 0.048030 0.002015 0.009112
Bud Site 0.002264 0.014111 0.004465 0.029426 0.003465 0.014353 0.001966 0.030771 0.003365 0.014233 0.004296 0.030207
Cell Periphery 0.000164 0.000137 0.000118 0.000298 0.000093 0.000179 0.000149 0.000243 0.000099 0.000158 0.000120 0.000266
Cytoplasm 0.371676* 0.409374* 0.459044* 0.444052* 0.513763* 0.367645* 0.198892* 0.544903* 0.501942* 0.388476* 0.441439* 0.502584*
Cytoplasmic Foci 0.331707* 0.252828* 0.017144 0.022491 0.227500* 0.298944* 0.026773 0.029090 0.236170* 0.275923* 0.017796 0.026321
Eisosomes 0.000214 0.000144 0.000030 0.000050 0.000132 0.000249 0.000083 0.000044 0.000139 0.000196 0.000033 0.000047
Endoplasmic Reticulum 0.000384 0.000456 0.000692 0.003142 0.000448 0.000554 0.002532 0.000691 0.000443 0.000505 0.000817 0.001719
Endosome 0.035638 0.018596 0.001504 0.008373 0.010462 0.023669 0.005790 0.008706 0.012556 0.021137 0.001794 0.008566
Golgi 0.001421 0.005883 0.000106 0.006987 0.002221 0.008807 0.004049 0.004395 0.002155 0.007348 0.000372 0.005483
Lipid Particles 0.018952 0.006089 0.000881 0.001517 0.007476 0.009880 0.004196 0.000972 0.008431 0.007988 0.001106 0.001201
Mitochondria 0.006688 0.015218 0.000368 0.008262 0.003722 0.023932 0.000350 0.003037 0.003969 0.019582 0.000367 0.005230
Mitotic Spindle 0.000053 0.007482 0.001471 0.032085 0.002565 0.008682 0.001722 0.038018 0.002356 0.008083 0.001488 0.035528
None 0.003922 0.002372 0.008346 0.006731 0.004412 0.002003 0.003064 0.005883 0.004371 0.002187 0.007989 0.006239
Nuclear Periphery 0.001117 0.000339 0.000770 0.001891 0.000399 0.000318 0.001470 0.000930 0.000459 0.000328 0.000817 0.001333
Nuclear Periphery Foci 0.000336 0.000211 0.000286 0.001867 0.000410 0.000220 0.000850 0.000521 0.000404 0.000215 0.000324 0.001085
Nucleolus 0.001653 0.001757 0.000644 0.000774 0.002323 0.001494 0.000832 0.000846 0.002267 0.001626 0.000656 0.000816
Nucleus 0.144640* 0.138157* 0.479804* 0.296308* 0.161796* 0.105302 0.697334* 0.234069* 0.160369* 0.121703 0.494525* 0.260186*
Peroxisomes 0.009189 0.016366 0.000322 0.001486 0.004766 0.024532 0.000577 0.001720 0.005134 0.020456 0.000339 0.001622
Vacuole 0.049145 0.065482 0.021608 0.120011 0.039788 0.053595 0.047980 0.080691 0.040567 0.059529 0.023393 0.097191
Vacuole Periphery 0.001902 0.001651 0.000211 0.006105 0.000906 0.001946 0.000422 0.003705 0.000989 0.001799 0.000226 0.004712

Localization Changes (T-score)

R1 R2 R1 & R2
UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14
Actin -1.71 -1.66 -6.00 0.27 -5.56 -4.59 -2.47 -3.32 1.06 -0.70 -3.09 -1.63 -5.55 0.73 -5.07
Bud Neck -4.39 3.21 2.36 15.81 -5.43 -14.20 10.95 3.28 16.23 -8.08 -17.03 10.44 4.86 22.36 -8.47
Bud Site -8.48 -2.16 -6.05 -0.64 -4.89 -9.71 1.82 -8.47 -3.28 -8.83 -12.26 -1.19 -10.12 -3.05 -8.74
Cell Periphery 1.36 3.25 -0.31 -1.24 -2.10 -5.43 -3.36 -1.85 0.14 -0.54 -4.52 -2.79 -2.72 -0.57 -1.95
Cytoplasm -1.74 -3.25 0.68 5.04 8.03 16.34 19.80 3.52 -11.83 -17.54 14.99 8.83 9.04 -5.78 -0.76
Cytoplasmic Foci 4.21 17.45 17.47 44.07 0.38 -9.59 29.79 38.96 49.66 0.23 -6.31 43.70 43.11 65.71 -2.47
Eisosomes 3.92 10.98 9.09 9.00 -12.71 -8.64 2.74 9.81 18.58 4.30 -5.46 12.99 10.71 20.09 -8.93
Endoplasmic Reticulum -0.84 -5.34 -10.37 -10.29 -8.80 -0.97 -6.66 -8.73 -4.86 5.49 -0.93 -8.84 -12.47 -11.46 -6.75
Endosome 2.51 5.11 4.66 11.75 -4.85 -8.53 3.02 5.13 11.89 -0.34 -6.87 12.50 7.78 16.32 -6.37
Golgi -5.95 3.99 -1.18 3.21 -2.91 -6.76 -0.04 -0.33 6.03 -0.07 -7.37 4.04 -0.47 6.62 -4.28
Lipid Particles 3.51 5.00 4.82 8.30 -5.90 -2.93 3.57 11.04 15.74 3.98 0.59 11.68 11.61 17.18 -0.89
Mitochondria -2.41 1.89 0.95 7.22 -3.15 -10.21 5.38 2.35 11.47 -4.97 -11.80 5.64 1.79 13.71 -5.01
Mitotic Spindle -5.69 -3.47 -7.90 -4.70 -7.25 -3.75 -0.51 -8.34 -5.91 -3.83 -4.59 0.66 -10.44 -7.61 -11.14
None 1.17 -2.67 -0.42 -3.64 3.77 3.08 2.24 -0.34 -4.03 -2.98 3.19 -3.16 -0.29 -5.33 3.51
Nuclear Periphery 1.13 0.31 -3.07 -18.24 -14.67 1.27 -8.46 -13.41 -14.88 3.32 1.69 -6.78 -16.59 -23.22 -14.86
Nuclear Periphery Foci 1.66 -0.29 -6.88 -7.75 -7.06 2.93 -3.72 -1.04 -4.60 3.36 3.29 0.15 -5.73 -8.93 -6.60
Nucleolus -0.43 3.26 2.91 4.71 -0.58 1.93 3.69 3.68 3.38 -0.07 1.64 4.12 3.91 5.69 -0.69
Nucleus 0.52 -23.72 -12.19 -22.32 16.19 11.13 -22.28 -16.60 -25.27 16.72 8.54 -44.83 -23.38 -32.99 24.70
Peroxisomes -3.22 4.51 4.32 15.91 -1.82 -13.76 8.42 6.89 17.31 -3.00 -15.80 9.78 8.40 23.23 -3.95
Vacuole -2.52 2.76 -17.94 -21.47 -27.24 -5.63 -4.02 -19.66 -16.23 -2.96 -9.44 3.40 -30.61 -26.02 -31.67
Vacuole Periphery 0.49 3.55 -0.38 -0.76 -2.67 -4.89 3.41 -2.27 -0.37 -3.32 -5.29 7.18 -2.61 -0.85 -4.42
Standard name
Human Ortholog
Description Small plasma membrane protein; confers resistance to amphotericin B and is a potential target of this common antifungal drug; related to a family of plant polypeptides that are overexpressed under high salt concentration or low temperature; not essential for viability; deletion causes hyperpolarization of the plasma membrane potential
Localization
Cell Percentages cytoplasm (24%)
Cell Cycle Regulation No
Subcompartmental Group cytoplasm-9

Pmp3

Pmp3


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)

Molecular Function (Gene Ontology)

Cellular Component (Gene Ontology)


Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Pmp3-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available