Standard name
Human Ortholog
Description Mitochondrial protein involved in assembly of succinate dehydrogenase; has a role in maturation of the Sdh2p subunit; localized to the mitochondrial intermembrane space; required for acetate utilization and gluconeogenesis; mutation in Drosophila ortholog SDHAF3 causes reduced succinate dehydrogenase activity and neuronal and muscular dysfunction; member of the LYR protein family

Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0.12 0.09 0 0 0.07 0 0 0 0.05 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0.06 0 0 0 0 0 0
Cytoplasm 0 0 0.07 0.07 0.07 0 0.05 0 0 0 0 0.07 0.09 0.1 0 0 0 0 0 0
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Endosome 0 0.05 0 0 0.11 0 0 0 0 0 0 0.11 0.13 0.16 0.08 0.1 0.06 0.08 0.11 0.1
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.06 0 0.05 0.07 0.05
Mitochondria 0.92 0.89 0.91 0.93 0.81 0.93 0.88 0.94 0.95 0.91 0.94 0.79 0.75 0.63 0.78 0.71 0.77 0.66 0.59 0.58
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0.07 0 0.06 0.05 0.11 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0.05 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0.06 0.11 0 0 0 0 0 0 0.07 0.1 0.13 0 0 0.07 0.07 0.05 0.05
SpindlePole 0 0 0 0 0 0 0.06 0 0 0 0 0.05 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0.17 0.1 0.05 0 0.07 0.06 0 0 0 0 0 0.08 0.06 0.11 0.05 0.05 0 0.06 0.06 0.09
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 1 0 0 0 0 0 0 0 3 2 0 2 4 2 0 3 8
Bud 5 2 18 16 6 4 21 12 13 6 13 6 11 11 0 0 0 1 3 4
Bud Neck 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 1 1 1 1
Bud Site 1 0 2 0 0 1 4 3 8 6 5 1 0 0
Cell Periphery 3 3 5 4 3 1 3 3 2 5 1 8 5 20 0 0 0 0 0 0
Cytoplasm 4 1 10 11 19 4 14 8 8 10 9 16 26 33 0 0 0 1 1 5
Endoplasmic Reticulum 4 2 0 1 1 1 1 0 1 1 1 5 10 1 0 0 1 0 1 2
Endosome 3 6 1 1 27 1 4 1 1 0 0 24 39 56 15 11 8 9 19 26
Golgi 1 0 0 0 2 0 0 0 0 1 1 6 5 5 3 6 0 5 12 12
Mitochondria 172 100 134 157 207 138 260 268 289 220 243 173 224 214 154 82 117 80 104 154
Nucleus 1 0 3 1 0 1 12 5 3 4 2 0 3 1 0 0 0 0 0 1
Nuclear Periphery 2 4 0 1 0 10 11 18 16 26 9 2 1 0 1 0 0 0 1 1
Nucleolus 3 1 0 0 3 4 7 11 6 10 14 0 1 0 1 0 1 0 1 2
Peroxisomes 2 1 2 10 27 1 8 3 3 1 1 15 30 45 5 2 11 8 8 13
SpindlePole 0 0 3 1 8 3 17 9 3 8 4 10 10 12 1 0 1 1 2 3
Vac/Vac Membrane 31 11 7 4 17 9 8 8 13 10 7 18 19 36 9 5 1 6 10 23
Unique Cell Count 187 112 148 169 257 148 294 285 304 241 259 219 300 342 198 116 152 121 177 267
Labelled Cell Count 232 131 186 208 320 178 370 350 366 308 310 287 386 434 198 116 152 121 177 267


Mitochondria

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 4.7 5.7 4.0 4.3 5.0 4.0 4.6 4.0 4.4 4.3 4.2 5.3 5.9 5.9 5.2 6.1 5.8
Std Deviation (1e-4) 0.6 1.4 1.4 2.0 2.1 0.9 2.0 1.4 1.5 1.9 1.8 1.5 1.9 1.9 1.6 2.3 1.4
Intensity Change (Log2) 0.12 0.33 -0.01 0.21 -0.01 0.14 0.11 0.08 0.42 0.55 0.56 0.39 0.6 0.54


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0
Bud 0 -4.0 0 0 0 0 0 0 -3.6 -3.4 -3.9
Bud Neck 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0.1 0 1.1
Cytoplasm -0.1 0.2 -1.6 -0.9 -2.0 -2.1 -1.1 -1.5 0.2 0.7 1.0
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0
Endosome 0 3.8 0 0 0 0 0 0 3.8 4.3 5.0
Golgi 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0 -2.7 0 0 0 0 0 0 -2.9 -3.9 -6.3
Nucleus 0 0 0 1.1 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 3.4 0 0 0 0 0 0 2.5 3.3 4.1
SpindlePole 0 0 0 0 0 0 0 0 1.3 0 0
Vacuole -1.1 0.8 0.5 -1.1 -1.0 -0.2 -0.3 -1.1 1.3 0.7 2.1

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration 0.6057 0.818 0.9009 0.3628 0.32 0.659 0.211 0.4384 0.5758 0.2797 0.8351 0.3598 1.9916 1.8823 1.8959 2.0563 1.457 1.7428
Actin 0.0285 0.0022 0.0157 0.0161 0.0063 0.0141 0.0262 0.0434 0.0209 0.0098 0.0123 0.005 0.029 0.013 0.0205 0.0459 0.0026 0.0129
Bud 0.0008 0.001 0.0037 0.0006 0.0002 0.0004 0.0012 0.0032 0.0017 0.0055 0.0009 0.0007 0.0008 0.0016 0.0009 0.0011 0.0079 0.0004
Bud Neck 0.0028 0.0004 0.0012 0.0011 0.0002 0.001 0.0008 0.001 0.0018 0.0004 0.0005 0.0014 0.001 0.0031 0.0009 0.0006 0.0003 0.0025
Bud Periphery 0.0012 0.0013 0.0076 0.0015 0.0005 0.0011 0.004 0.0042 0.0046 0.0278 0.0027 0.0024 0.0018 0.0028 0.002 0.0051 0.0365 0.001
Bud Site 0.0087 0.0049 0.0131 0.0012 0.0003 0.0009 0.0034 0.0187 0.014 0.0014 0.0011 0.0006 0.0038 0.0132 0.0106 0.0016 0.0008 0.0007
Cell Periphery 0.0008 0.0003 0.0015 0.0005 0.0001 0.0003 0.0008 0.0005 0.0019 0.0004 0.0004 0.0025 0.0009 0.0014 0.0007 0.0011 0.0003 0.0004
Cytoplasm 0.0112 0.0029 0.0103 0.0006 0.0006 0.0082 0.0047 0.009 0.0068 0.0069 0.002 0.0063 0.0054 0.0071 0.0043 0.0017 0.0027 0.0047
Cytoplasmic Foci 0.0477 0.0235 0.0426 0.0243 0.021 0.0219 0.0541 0.0652 0.0423 0.0502 0.0515 0.0362 0.0414 0.0446 0.0342 0.0354 0.0272 0.0273
Eisosomes 0.0005 0.0001 0.0005 0.0002 0.0001 0.0004 0.0007 0.0005 0.0007 0.0002 0.0002 0.0003 0.0015 0.0004 0.0006 0.0005 0.0002 0.0003
Endoplasmic Reticulum 0.0029 0.0016 0.0013 0.0003 0.0006 0.0011 0.0035 0.0006 0.0009 0.0018 0.0005 0.0013 0.0033 0.0005 0.0017 0.0005 0.0002 0.0007
Endosome 0.1016 0.0974 0.0644 0.0783 0.0612 0.0496 0.1216 0.0868 0.0737 0.064 0.1377 0.0659 0.0865 0.0774 0.0492 0.0614 0.0336 0.0435
Golgi 0.0628 0.0754 0.0355 0.0483 0.0769 0.051 0.0831 0.0732 0.0692 0.0525 0.0729 0.0782 0.0619 0.0651 0.0378 0.0609 0.0289 0.0543
Lipid Particles 0.0595 0.0047 0.0225 0.0171 0.015 0.0207 0.0558 0.0122 0.0159 0.0538 0.039 0.0184 0.0623 0.0079 0.023 0.0048 0.0028 0.0287
Mitochondria 0.6016 0.7265 0.6763 0.7316 0.7518 0.7714 0.5591 0.5969 0.6667 0.6069 0.6451 0.7212 0.6172 0.6618 0.7291 0.7352 0.8104 0.7731
None 0.0017 0.0002 0.0174 0.0002 0.0002 0.0103 0.0169 0.0099 0.0097 0.0253 0.0006 0.0012 0.0069 0.0043 0.0155 0.0026 0.0009 0.0073
Nuclear Periphery 0.0019 0.0008 0.0041 0.0002 0.0019 0.0008 0.0062 0.0002 0.0003 0.0017 0.0003 0.0009 0.0038 0.0002 0.0016 0.0003 0.0001 0.0015
Nucleolus 0.0009 0.0004 0.0012 0.0002 0.0001 0.0003 0.0006 0.0009 0.0006 0.0007 0.0003 0.0004 0.0007 0.0003 0.0011 0.0001 0.0001 0.0003
Nucleus 0.0013 0.0006 0.0014 0.0002 0.0001 0.0003 0.0009 0.0007 0.0005 0.0008 0.0002 0.0013 0.0009 0.0003 0.0008 0.0002 0.0002 0.0003
Peroxisomes 0.0474 0.0306 0.0621 0.0712 0.0587 0.0361 0.0306 0.066 0.0582 0.0659 0.0235 0.0441 0.0495 0.0795 0.0579 0.0381 0.0414 0.0344
Punctate Nuclear 0.0009 0.0001 0.0013 0.0003 0.0001 0.0009 0.0052 0.0005 0.0003 0.001 0.0004 0.0006 0.0032 0.0002 0.0006 0.0002 0 0.0009
Vacuole 0.0098 0.0141 0.0111 0.0031 0.0013 0.0046 0.0138 0.0042 0.0059 0.0175 0.0046 0.0068 0.0082 0.0089 0.0046 0.0013 0.0018 0.002
Vacuole Periphery 0.0056 0.011 0.0051 0.0028 0.0029 0.0046 0.0067 0.0023 0.0033 0.0056 0.0031 0.0043 0.0102 0.0065 0.0026 0.0014 0.0013 0.0026

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 32.9374 14.722 10.9244 30.8244 16.0143 32.9192 26.6697 27.6283 38.458 36.4816
Translational Efficiency 0.7518 1.5886 1.9908 1.0674 1.696 1.5207 1.6359 1.914 1.4888 1.3819

Hit Data

Dataset Hit
Protein Concentration
Protein Localization
Gene Expression
Translational Efficiency

Micrographs

Cell Count

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
688 1507 1317 1495 50 2197 2014 1036 738 3704 3331 2531

Protein Abundance

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Mean 670.88 786.48 961.96 921.32 654.34 787.42 921.59 943.93 669.76 787.04 937.55 930.57
Standard Deviation 91.55 108.21 126.82 130.71 88.06 101.87 111.65 142.00 91.41 104.50 119.52 135.90
Intensity Change Log 2 0.229355 0.519922 0.457648 0.267093 0.494085 0.528639 0.248112 0.507222 0.493137

Localization Score (DeepLoc)

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Actin 0.000616 0.001460 0.002842 0.008805 0.000347 0.001065 0.008123 0.018239 0.000598 0.001226 0.006035 0.012667
Bud Neck 0.034416 0.005203 0.007525 0.006283 0.007019 0.003700 0.005395 0.004318 0.032560 0.004311 0.006237 0.005479
Bud Site 0.022179 0.011553 0.013528 0.054828 0.002793 0.005496 0.040137 0.062239 0.020866 0.007960 0.029616 0.057862
Cell Periphery 0.000505 0.000381 0.000314 0.000449 0.002006 0.000247 0.000317 0.000949 0.000606 0.000301 0.000316 0.000654
Cytoplasm 0.021539 0.005542 0.004313 0.015458 0.000764 0.004671 0.011015 0.016944 0.020132 0.005025 0.008365 0.016066
Cytoplasmic Foci 0.082161 0.064613 0.066062 0.061994 0.026310 0.044071 0.073665 0.080816 0.078377 0.052429 0.070659 0.069699
Eisosomes 0.000194 0.000119 0.000079 0.000111 0.000082 0.000084 0.000110 0.000172 0.000186 0.000098 0.000098 0.000136
Endoplasmic Reticulum 0.001070 0.000345 0.001951 0.001372 0.000307 0.000399 0.001581 0.000783 0.001018 0.000377 0.001727 0.001131
Endosome 0.074989 0.084257 0.126825 0.090779 0.027810 0.082832 0.089697 0.077993 0.071793 0.083412 0.104377 0.085545
Golgi 0.109616 0.144614* 0.094623 0.117542* 0.044844 0.134396* 0.094276 0.130065* 0.105228 0.138553* 0.094413 0.122668*
Lipid Particles 0.015192 0.003642 0.010996 0.002021 0.011538 0.003434 0.001526 0.001041 0.014944 0.003518 0.005270 0.001620
Mitochondria 0.564141* 0.584104* 0.448595* 0.451473* 0.787932* 0.652388* 0.460239* 0.400382* 0.579303* 0.624606* 0.455635* 0.430561*
Mitotic Spindle 0.004607 0.014638 0.051445 0.064172 0.001412 0.007533 0.080638 0.061938 0.004391 0.010424 0.069096 0.063257
None 0.004048 0.000432 0.000552 0.000496 0.000344 0.000381 0.000216 0.000189 0.003797 0.000402 0.000348 0.000371
Nuclear Periphery 0.000191 0.000056 0.002732 0.000574 0.000035 0.000141 0.000282 0.000067 0.000181 0.000107 0.001251 0.000367
Nuclear Periphery Foci 0.000313 0.000145 0.004574 0.000678 0.000067 0.000138 0.000421 0.000161 0.000297 0.000141 0.002063 0.000466
Nucleolus 0.001679 0.000330 0.004002 0.000295 0.000294 0.000435 0.000304 0.000243 0.001585 0.000392 0.001766 0.000274
Nucleus 0.004277 0.000438 0.003764 0.000902 0.000354 0.000345 0.001860 0.000822 0.004011 0.000383 0.002613 0.000869
Peroxisomes 0.021129 0.060241 0.031924 0.042372 0.077493 0.037199 0.074554 0.115619* 0.024948 0.046574 0.057699 0.072354
Vacuole 0.020397 0.008088 0.065889 0.052118 0.003962 0.009990 0.038964 0.017112 0.019284 0.009216 0.049609 0.037789
Vacuole Periphery 0.016741 0.009801 0.057464 0.027276 0.004287 0.011055 0.016681 0.009907 0.015897 0.010544 0.032805 0.020167

Localization Changes (T-score)

R1 R2 R1 & R2
UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14
Actin -2.96 -4.33 -6.61 -5.90 -4.51 -1.87 -9.03 -8.39 -7.94 -4.41 -2.14 -9.40 -10.50 -9.85 -5.24
Bud Neck 6.72 6.10 6.44 -1.10 0.93 0.97 0.43 0.78 -0.90 2.00 6.99 6.49 6.68 -1.80 1.15
Bud Site 3.56 2.89 -7.98 -12.78 -12.27 -2.40 -16.85 -13.97 -13.58 -4.81 4.98 -3.20 -10.53 -19.29 -9.94
Cell Periphery 1.59 2.84 0.79 -1.07 -2.79 1.38 1.33 0.80 -1.72 -1.54 2.86 2.76 -0.22 -2.06 -1.99
Cytoplasm 5.33 5.65 1.60 -7.05 -7.48 -5.59 -13.02 -9.20 -6.75 -3.26 5.48 4.09 0.99 -9.97 -6.68
Cytoplasmic Foci 3.19 2.88 3.71 0.78 1.09 -2.57 -6.62 -7.22 -10.13 -1.75 5.36 1.63 1.81 -7.14 0.38
Eisosomes 2.16 3.89 2.80 0.41 -5.10 -0.18 -2.08 -5.58 -8.55 -6.18 3.10 3.21 1.82 -3.98 -6.74
Endoplasmic Reticulum 2.44 -2.66 -1.03 -5.19 2.24 -0.58 -6.88 -2.85 -2.33 4.17 2.42 -2.67 -0.47 -5.67 3.78
Endosome -1.69 -8.22 -2.80 -1.31 6.45 -4.69 -5.28 -4.19 1.17 2.74 -2.47 -6.69 -2.76 -0.53 5.53
Golgi -4.42 2.02 -0.92 4.29 -3.70 -6.68 -3.69 -6.11 0.84 -5.96 -5.02 1.75 -2.43 3.76 -6.69
Lipid Particles 4.01 1.24 4.61 2.07 5.25 0.94 1.16 1.21 3.35 1.42 4.19 3.47 4.92 3.47 5.05
Mitochondria -1.26 6.97 7.07 10.39 -0.04 3.20 7.78 9.03 19.30 4.35 -3.24 8.71 10.21 21.64 2.75
Mitotic Spindle -5.65 -13.17 -15.05 -12.08 -2.62 -7.83 -22.77* -14.08 -12.55 3.18 -5.24 -24.40 -19.66 -17.89 1.30
None 2.23 2.16 2.15 -0.31 0.11 -0.22 0.87 1.03 1.45 1.34 2.25 2.29 2.25 0.09 -0.25
Nuclear Periphery 2.29 -6.06 -2.28 -3.27 4.85 -1.25 -5.32 -2.43 0.82 4.59 1.00 -6.09 -1.74 -2.47 4.60
Nuclear Periphery Foci 2.94 -4.60 -2.70 -4.20 4.17 -1.70 -4.86 -2.97 -0.73 3.36 2.87 -4.76 -1.95 -4.21 4.23
Nucleolus 2.09 -2.21 2.13 0.21 4.85 -0.77 -0.20 0.20 0.91 0.42 1.97 -0.17 2.16 0.94 4.78
Nucleus 4.45 0.39 3.68 -2.66 4.33 -0.00 -3.63 -1.79 -2.07 2.28 4.52 1.43 3.72 -3.51 4.54
Peroxisomes -8.93 -3.02 -5.39 3.74 -2.48 1.58 0.11 -1.45 -11.44 -5.53 -6.15 -8.69 -10.85 -6.61 -3.51
Vacuole 5.59 -12.17 -9.49 -15.39 2.84 -1.78 -9.41 -3.75 -4.15 8.25 4.99 -11.96 -7.41 -15.31 4.37
Vacuole Periphery 4.25 -12.59 -5.00 -10.11 9.25 -4.10 -6.86 -2.86 0.86 4.31 3.73 -8.93 -2.46 -8.18 7.50
Standard name
Human Ortholog
Description Mitochondrial protein involved in assembly of succinate dehydrogenase; has a role in maturation of the Sdh2p subunit; localized to the mitochondrial intermembrane space; required for acetate utilization and gluconeogenesis; mutation in Drosophila ortholog SDHAF3 causes reduced succinate dehydrogenase activity and neuronal and muscular dysfunction; member of the LYR protein family
Localization
Cell Percentages mitochondrion (95%)
Cell Cycle Regulation No
Subcompartmental Group mito-1

Sdh7

Sdh7


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)

Molecular Function (Gene Ontology)

Cellular Component (Gene Ontology)


Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Sdh7-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available