Standard name | |
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Human Ortholog | |
Description | Component of both the SWI/SNF and RSC chromatin remodeling complexes; suggested role in chromosome maintenance; possible weak regulator of Ty1 transposition; protein abundance increases in response to DNA replication stress |
ensLOC | DeepLoc | |||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 1 | 0 | – | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 3 | 5 | 1 | 2 | 2 | 7 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 1 | 0 | – | 2 | 1 | 0 | 1 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 1 |
Bud Site | 2 | 2 | 0 | 0 | 0 | 2 | 0 | – | 4 | 4 | 5 | 3 | 0 | 0 | 1 | 0 | 0 | 3 | – | – | – | – | – | – |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 7 | 10 | 0 | 5 | 11 | 13 | 34 | – | 21 | 14 | 11 | 4 | 25 | 102 | 129 | 6 | 5 | 13 | 0 | 0 | 0 | 0 | 1 | 2 |
Endoplasmic Reticulum | 1 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 1 |
Endosome | 2 | 1 | 1 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 4 | 3 | 1 | 0 | 0 | 7 | 1 | 3 | 3 | 3 | 4 |
Golgi | 0 | 0 | 0 | 0 | 1 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 0 | 0 | 1 | 0 | 0 |
Mitochondria | 9 | 18 | 1 | 1 | 1 | 25 | 7 | – | 10 | 9 | 10 | 9 | 2 | 0 | 0 | 8 | 9 | 14 | 3 | 2 | 1 | 0 | 1 | 2 |
Nucleus | 383 | 450 | 63 | 130 | 127 | 110 | 178 | – | 111 | 138 | 84 | 77 | 430 | 748 | 686 | 240 | 244 | 204 | 355 | 455 | 87 | 339 | 471 | 466 |
Nuclear Periphery | 1 | 1 | 0 | 1 | 2 | 1 | 1 | – | 2 | 1 | 0 | 0 | 0 | 1 | 4 | 2 | 3 | 3 | 0 | 0 | 0 | 0 | 0 | 1 |
Nucleolus | 153 | 81 | 9 | 19 | 14 | 51 | 52 | – | 56 | 69 | 57 | 71 | 100 | 117 | 95 | 55 | 43 | 51 | 92 | 37 | 20 | 114 | 184 | 153 |
Peroxisomes | 1 | 1 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 5 | 7 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 3 | 0 | 1 | 2 | 1 | 0 | 1 | – | 2 | 1 | 0 | 1 | 5 | 14 | 14 | 5 | 1 | 3 | 3 | 1 | 0 | 5 | 7 | 10 |
Vac/Vac Membrane | 2 | 4 | 0 | 0 | 0 | 0 | 5 | – | 0 | 1 | 0 | 0 | 1 | 4 | 4 | 3 | 6 | 5 | 10 | 10 | 2 | 18 | 24 | 27 |
Unique Cell Count | 439 | 497 | 69 | 139 | 146 | 154 | 242 | 170 | 185 | 127 | 121 | 490 | 909 | 862 | 284 | 279 | 257 | 485 | 519 | 121 | 488 | 699 | 685 | |
Labelled Cell Count | 564 | 568 | 75 | 158 | 157 | 204 | 278 | 209 | 239 | 167 | 166 | 563 | 996 | 945 | 322 | 312 | 299 | 485 | 519 | 121 | 488 | 699 | 685 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 8.3 | 8.0 | 8.5 | 8.0 | 9.0 | 6.0 | 8.3 | – | 7.5 | 7.8 | 7.6 | 7.2 | 8.8 | 8.7 | 9.2 | 10.9 | 11.4 | 10.3 | 7.2 | 8.1 | 8.4 |
Std Deviation (1e-4) | 2.3 | 1.7 | 1.9 | 1.5 | 2.1 | 1.7 | 2.3 | – | 2.2 | 2.7 | 2.0 | 1.8 | 2.1 | 2.3 | 2.6 | 3.3 | 3.5 | 3.8 | 1.7 | 2.0 | 2.0 |
Intensity Change (Log2) | – | – | – | -0.09 | 0.08 | -0.49 | -0.03 | – | -0.19 | -0.13 | -0.17 | -0.25 | 0.04 | 0.03 | 0.11 | 0.36 | 0.42 | 0.27 | -0.25 | -0.06 | -0.02 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 0 | 0 | 0 | 3.3 | – | 3.1 | 0 | 0 | 0 | 0 | 2.9 | 3.5 | 0 | 0 | 0 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 0 | 0 | 3.2 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleus | 0.6 | -0.9 | -3.3 | -3.1 | – | -4.1 | -2.9 | -3.9 | -4.2 | -0.9 | -1.9 | -2.4 | -1.5 | -0.9 | -2.3 |
Nuclear Periphery | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0.1 | -0.8 | 3.1 | 1.6 | – | 3.1 | 3.7 | 4.5 | 6.1 | 1.4 | 0 | -0.5 | 1.2 | 0.5 | 1.3 |
Peroxisomes | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 2.4537 | 1.6685 | 1.6916 | 1.2909 | 1.4036 | 1.8506 | 4.1431 | 3.4679 | 3.2483 | 3.3712 | 3.2523 | 3.6789 | 6.7734 | 6.4203 | 6.5278 | 7.007 | 6.0779 | 6.3892 |
Actin | 0.009 | 0 | 0.0002 | 0 | 0.0005 | 0.0005 | 0.023 | 0.0004 | 0.0098 | 0.0278 | 0.0057 | 0.0003 | 0.0159 | 0 | 0.0009 | 0.0001 | 0.0068 | 0.0001 |
Bud | 0.0001 | 0 | 0 | 0 | 0.0001 | 0 | 0.0002 | 0.0001 | 0.0002 | 0.0007 | 0.0004 | 0.0001 | 0.0005 | 0 | 0.0006 | 0.0001 | 0.0005 | 0 |
Bud Neck | 0.0007 | 0 | 0.0001 | 0.0001 | 0.0007 | 0.0013 | 0.001 | 0.0002 | 0.0002 | 0.0006 | 0.0004 | 0.0004 | 0.0053 | 0.0001 | 0.0005 | 0.0006 | 0.0007 | 0.0005 |
Bud Periphery | 0.0003 | 0 | 0.0001 | 0.0001 | 0.0001 | 0 | 0.0004 | 0.0003 | 0.0002 | 0.0018 | 0.001 | 0.0002 | 0.0011 | 0 | 0.0009 | 0.0001 | 0.0007 | 0 |
Bud Site | 0.0003 | 0 | 0.0001 | 0.0001 | 0.0003 | 0.0001 | 0.0015 | 0.0023 | 0.001 | 0.0025 | 0.0007 | 0.0001 | 0.0019 | 0 | 0.0015 | 0.0001 | 0.003 | 0 |
Cell Periphery | 0.0001 | 0 | 0 | 0 | 0.0001 | 0 | 0.0001 | 0.0002 | 0.0001 | 0.0005 | 0.0001 | 0.0001 | 0.0002 | 0 | 0.0001 | 0 | 0.0002 | 0 |
Cytoplasm | 0.0011 | 0.0001 | 0.0009 | 0 | 0.0221 | 0.0003 | 0.0023 | 0 | 0.0012 | 0.0002 | 0.0004 | 0.0002 | 0.0037 | 0 | 0.0094 | 0.0171 | 0.0004 | 0.0001 |
Cytoplasmic Foci | 0.0132 | 0 | 0.0004 | 0 | 0.001 | 0.0005 | 0.0097 | 0 | 0.0042 | 0.0025 | 0.0035 | 0.0002 | 0.0044 | 0 | 0.0064 | 0.0001 | 0.0036 | 0.0015 |
Eisosomes | 0.0001 | 0 | 0 | 0 | 0 | 0 | 0.0002 | 0.0001 | 0.0001 | 0.0001 | 0.0002 | 0 | 0.0001 | 0 | 0 | 0 | 0.0001 | 0 |
Endoplasmic Reticulum | 0.0011 | 0 | 0.0003 | 0 | 0.0018 | 0.0003 | 0.004 | 0 | 0.0013 | 0.0006 | 0.002 | 0.0006 | 0.0029 | 0 | 0.0008 | 0.0007 | 0.0009 | 0.0002 |
Endosome | 0.0057 | 0 | 0.0012 | 0 | 0.0026 | 0.0032 | 0.0106 | 0.0001 | 0.0054 | 0.0128 | 0.0262 | 0.0028 | 0.013 | 0 | 0.0036 | 0.0002 | 0.0042 | 0.0007 |
Golgi | 0.0018 | 0 | 0.0001 | 0 | 0.0001 | 0.0004 | 0.0056 | 0.0001 | 0.0032 | 0.0047 | 0.0111 | 0.0006 | 0.0034 | 0 | 0.0004 | 0 | 0.0021 | 0.0001 |
Lipid Particles | 0.0134 | 0 | 0.0002 | 0 | 0.0001 | 0.0006 | 0.0092 | 0.0001 | 0.0036 | 0.008 | 0.0068 | 0.0028 | 0.0133 | 0 | 0.0016 | 0 | 0.0076 | 0.0005 |
Mitochondria | 0.0019 | 0 | 0.0004 | 0.0002 | 0.0008 | 0.0005 | 0.0026 | 0.0037 | 0.0012 | 0.0092 | 0.0527 | 0.0008 | 0.0072 | 0 | 0.0021 | 0.0001 | 0.0021 | 0.0003 |
None | 0.0011 | 0 | 0.0003 | 0 | 0.002 | 0.0002 | 0.004 | 0 | 0.0011 | 0.0002 | 0.0002 | 0.0003 | 0.0018 | 0 | 0.0014 | 0.02 | 0.0009 | 0 |
Nuclear Periphery | 0.0132 | 0.0007 | 0.0036 | 0.0003 | 0.0054 | 0.0026 | 0.0231 | 0.0004 | 0.0029 | 0.0016 | 0.0096 | 0.0035 | 0.0176 | 0.0003 | 0.0039 | 0.0019 | 0.0036 | 0.0029 |
Nucleolus | 0.0339 | 0.0258 | 0.0193 | 0.0417 | 0.1291 | 0.073 | 0.02 | 0.0257 | 0.0181 | 0.0221 | 0.1444 | 0.0741 | 0.0438 | 0.0322 | 0.0252 | 0.0466 | 0.1594 | 0.058 |
Nucleus | 0.876 | 0.9682 | 0.9673 | 0.9561 | 0.7937 | 0.913 | 0.8688 | 0.9585 | 0.934 | 0.8898 | 0.705 | 0.911 | 0.8441 | 0.9662 | 0.9324 | 0.9053 | 0.7952 | 0.9282 |
Peroxisomes | 0.0103 | 0 | 0.0001 | 0 | 0.0001 | 0.0001 | 0.0038 | 0.0001 | 0.0074 | 0.0038 | 0.0005 | 0 | 0.0019 | 0 | 0.0007 | 0 | 0.0011 | 0.0001 |
Punctate Nuclear | 0.0146 | 0.0051 | 0.0048 | 0.0011 | 0.0385 | 0.0028 | 0.0071 | 0.0072 | 0.0033 | 0.002 | 0.026 | 0.0008 | 0.0143 | 0.0011 | 0.0062 | 0.0066 | 0.0051 | 0.0066 |
Vacuole | 0.0011 | 0 | 0.0003 | 0.0001 | 0.0005 | 0.0002 | 0.0017 | 0.0003 | 0.0013 | 0.0062 | 0.0012 | 0.0006 | 0.0024 | 0 | 0.0012 | 0.0003 | 0.0011 | 0.0002 |
Vacuole Periphery | 0.0009 | 0 | 0.0002 | 0 | 0.0003 | 0.0002 | 0.0012 | 0.0001 | 0.0004 | 0.0022 | 0.0017 | 0.0005 | 0.0012 | 0 | 0.0004 | 0 | 0.0008 | 0.0001 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 36.0818 | 31.2144 | 38.6041 | 35.8671 | 45.2725 | 34.8985 | 28.4048 | 27.6919 | 40.7704 | 39.2321 |
Translational Efficiency | 3.4712 | 2.7409 | 1.888 | 2.2523 | 2.5192 | 3.4113 | 2.2164 | 2.8647 | 1.6635 | 2.576 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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