Standard name | |
---|---|
Human Ortholog | |
Description | Protein involved in transcription-coupled nucleotide excision repair; repairs UV-induced DNA lesions; recruitment to DNA lesions is dependent on an elongating RNA polymerase II; homolog of human CSB protein |
ensLOC | DeepLoc | |||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 1 | 0 | 0 | 1 |
Bud | 0 | 3 | 2 | 1 | 0 | 1 | 3 | 6 | 5 | – | 11 | 9 | 0 | 2 | 5 | 0 | 0 | 0 | 2 | 3 | 1 | 1 | 7 | 8 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 3 | 1 | – | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 2 | 3 | 3 |
Bud Site | 0 | 0 | 1 | 0 | 0 | 5 | 6 | 8 | 6 | – | 9 | 9 | 0 | 0 | 1 | 0 | 0 | 1 | – | – | – | – | – | – |
Cell Periphery | 0 | 14 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 11 | 0 | 0 | 0 | 0 |
Cytoplasm | 11 | 34 | 22 | 15 | 45 | 40 | 58 | 78 | 38 | – | 33 | 36 | 48 | 69 | 84 | 18 | 24 | 21 | 6 | 24 | 13 | 11 | 13 | 19 |
Endoplasmic Reticulum | 2 | 2 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | – | 0 | 0 | 0 | 3 | 2 | 5 | 3 | 5 | 0 | 1 | 0 | 0 | 1 | 3 |
Endosome | 1 | 5 | 1 | 0 | 11 | 2 | 1 | 3 | 1 | – | 0 | 0 | 4 | 0 | 3 | 5 | 2 | 2 | 6 | 3 | 1 | 0 | 1 | 10 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 2 | 2 | 0 | 1 | 1 | 0 | 0 | 1 | 0 |
Mitochondria | 0 | 38 | 51 | 72 | 62 | 142 | 204 | 266 | 211 | – | 224 | 234 | 28 | 39 | 72 | 9 | 5 | 9 | 3 | 8 | 12 | 1 | 6 | 25 |
Nucleus | 67 | 93 | 88 | 55 | 104 | 103 | 134 | 150 | 94 | – | 76 | 64 | 142 | 165 | 121 | 52 | 70 | 63 | 71 | 128 | 95 | 94 | 137 | 94 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
Nucleolus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | – | 2 | 1 | 1 | 5 | 1 | 1 | 0 | 1 | 2 | 0 | 1 | 1 | 10 | 13 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 2 | 0 | 2 | 0 | 3 | 2 | 1 | 6 | 3 | – | 4 | 0 | 2 | 2 | 0 | 1 | 2 | 1 | 3 | 6 | 3 | 4 | 8 | 26 |
Vac/Vac Membrane | 7 | 46 | 8 | 8 | 32 | 26 | 12 | 18 | 9 | – | 7 | 15 | 26 | 29 | 48 | 9 | 16 | 12 | 23 | 42 | 52 | 51 | 93 | 98 |
Unique Cell Count | 87 | 201 | 149 | 114 | 220 | 242 | 317 | 402 | 269 | 261 | 271 | 232 | 288 | 296 | 93 | 117 | 100 | 122 | 243 | 187 | 173 | 291 | 322 | |
Labelled Cell Count | 90 | 237 | 175 | 151 | 257 | 322 | 420 | 541 | 368 | 367 | 369 | 251 | 314 | 337 | 102 | 125 | 115 | 122 | 243 | 187 | 173 | 291 | 322 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 5.0 | 4.3 | 3.9 | 4.1 | 4.2 | 3.6 | 3.4 | 3.5 | 3.1 | – | 2.8 | 2.7 | 4.3 | 4.3 | 4.0 | 6.0 | 6.7 | 6.2 | 4.9 | 4.6 | 4.8 |
Std Deviation (1e-4) | 0.7 | 0.9 | 1.2 | 1.9 | 1.8 | 1.0 | 1.1 | 1.6 | 1.3 | – | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.9 | 2.6 | 2.4 | 1.7 | 1.3 | 1.2 |
Intensity Change (Log2) | – | – | – | 0.1 | 0.13 | -0.12 | -0.2 | -0.12 | -0.34 | – | -0.44 | -0.51 | 0.15 | 0.16 | 0.05 | 0.65 | 0.8 | 0.69 | 0.33 | 0.24 | 0.33 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Actin | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Bud | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Bud Neck | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Bud Site | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Cell Periphery | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Cyto | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Endoplasmic Reticulum | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Endosome | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Golgi | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Mitochondria | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Nuclear Periphery | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Nuc | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nucleolus | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Peroxisomes | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
SpindlePole | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Vac | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cortical Patches | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Cytoplasm | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Nucleus | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Vacuole | – | – | – | – | – | – | – | – | – | – | – | – | 1.3 | 2.3 | 1.9 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 1.0533 | 1.0535 | 0.6308 | 1.0297 | 0.5602 | 0.7931 | 1.2074 | 1.6247 | 1.5234 | 1.4767 | 1.0898 | 1.5061 | 1.5687 | 2.5997 | 2.0854 | 1.9361 | 2.0578 | 2.1371 |
Actin | 0.0801 | 0.0005 | 0.0128 | 0.0003 | 0.0053 | 0.0137 | 0.0333 | 0.0013 | 0.0038 | 0.0278 | 0.0012 | 0.0028 | 0.0002 | 0.0003 | 0.0151 | 0.0646 | 0.0002 | 0.0048 |
Bud | 0.0014 | 0.0001 | 0.0005 | 0 | 0.0002 | 0.0001 | 0.0007 | 0.0001 | 0.0006 | 0.002 | 0.0005 | 0.0002 | 0.0001 | 0.0001 | 0.0004 | 0.0012 | 0.0001 | 0.0001 |
Bud Neck | 0.0264 | 0.0008 | 0.001 | 0.0002 | 0.0069 | 0.0221 | 0.0034 | 0.0007 | 0.0007 | 0.0039 | 0.002 | 0.0059 | 0.0004 | 0.0003 | 0.0005 | 0.0005 | 0.001 | 0.0028 |
Bud Periphery | 0.0039 | 0.0001 | 0.0008 | 0 | 0.0005 | 0.0001 | 0.001 | 0.0001 | 0.0009 | 0.0032 | 0.0005 | 0.0002 | 0.0001 | 0.0001 | 0.0007 | 0.0015 | 0.0001 | 0.0001 |
Bud Site | 0.0054 | 0.0016 | 0.0047 | 0.0001 | 0.0009 | 0.0002 | 0.0023 | 0.0093 | 0.0023 | 0.0157 | 0.0047 | 0.0005 | 0.0004 | 0.0006 | 0.0026 | 0.0011 | 0.0001 | 0.0003 |
Cell Periphery | 0.001 | 0.0001 | 0.0001 | 0 | 0.0002 | 0.0001 | 0.0003 | 0 | 0.0001 | 0.0005 | 0.0001 | 0 | 0.0001 | 0.0001 | 0.0002 | 0 | 0.0001 | 0 |
Cytoplasm | 0.0641 | 0.062 | 0.0872 | 0.0432 | 0.0752 | 0.0647 | 0.0655 | 0.0667 | 0.0571 | 0.0306 | 0.1061 | 0.0271 | 0.0348 | 0.0491 | 0.0293 | 0.0733 | 0.0761 | 0.0334 |
Cytoplasmic Foci | 0.0186 | 0.0028 | 0.0074 | 0.0032 | 0.0013 | 0.0104 | 0.0143 | 0.0039 | 0.016 | 0.0096 | 0.0041 | 0.0056 | 0.001 | 0.0016 | 0.0068 | 0.0064 | 0.0007 | 0.0047 |
Eisosomes | 0.0007 | 0 | 0.0002 | 0 | 0.0001 | 0.0002 | 0.0003 | 0 | 0 | 0.0004 | 0.0001 | 0 | 0 | 0.0001 | 0.0002 | 0.0002 | 0.0001 | 0.0001 |
Endoplasmic Reticulum | 0.0089 | 0.0037 | 0.0036 | 0.0014 | 0.016 | 0.0034 | 0.0107 | 0.0011 | 0.0018 | 0.0015 | 0.0062 | 0.0011 | 0.0021 | 0.0038 | 0.0069 | 0.0018 | 0.0025 | 0.0011 |
Endosome | 0.029 | 0.0027 | 0.0067 | 0.001 | 0.0072 | 0.006 | 0.0183 | 0.0012 | 0.0165 | 0.0387 | 0.0171 | 0.0028 | 0.0014 | 0.0018 | 0.0096 | 0.0074 | 0.0016 | 0.0072 |
Golgi | 0.0069 | 0.0001 | 0.0015 | 0.0001 | 0.0004 | 0.0023 | 0.0052 | 0.0001 | 0.0021 | 0.0137 | 0.0008 | 0.0028 | 0 | 0 | 0.0053 | 0.0115 | 0 | 0.0021 |
Lipid Particles | 0.0178 | 0.0004 | 0.0035 | 0.0003 | 0.0005 | 0.002 | 0.0072 | 0.0003 | 0.0026 | 0.0074 | 0.0013 | 0.0053 | 0.0001 | 0.0003 | 0.0026 | 0.0015 | 0.0001 | 0.0009 |
Mitochondria | 0.0062 | 0.0006 | 0.0018 | 0.0003 | 0.0033 | 0.0008 | 0.0088 | 0.0005 | 0.0037 | 0.0048 | 0.0026 | 0.0079 | 0.0016 | 0.0012 | 0.0156 | 0.014 | 0.0007 | 0.0006 |
None | 0.0361 | 0.0713 | 0.0718 | 0.1777 | 0.0319 | 0.0632 | 0.0581 | 0.1169 | 0.0868 | 0.0423 | 0.0387 | 0.0796 | 0.1206 | 0.1416 | 0.0834 | 0.1259 | 0.1813 | 0.1025 |
Nuclear Periphery | 0.0285 | 0.0184 | 0.0208 | 0.0082 | 0.0522 | 0.0132 | 0.0267 | 0.0087 | 0.0127 | 0.0073 | 0.0394 | 0.0284 | 0.0134 | 0.0296 | 0.0166 | 0.0257 | 0.0115 | 0.0057 |
Nucleolus | 0.0108 | 0.0064 | 0.0068 | 0.0035 | 0.0101 | 0.0088 | 0.007 | 0.0067 | 0.005 | 0.0028 | 0.0103 | 0.0084 | 0.0075 | 0.0084 | 0.0054 | 0.0035 | 0.0091 | 0.0109 |
Nucleus | 0.579 | 0.8001 | 0.7265 | 0.6803 | 0.675 | 0.7351 | 0.6268 | 0.7111 | 0.6447 | 0.7117 | 0.5961 | 0.6737 | 0.8035 | 0.7399 | 0.7647 | 0.6245 | 0.7073 | 0.7963 |
Peroxisomes | 0.0204 | 0.0001 | 0.0036 | 0.0001 | 0.0003 | 0.0002 | 0.0041 | 0.0003 | 0.0097 | 0.002 | 0.001 | 0.0109 | 0 | 0.0001 | 0.0044 | 0.004 | 0 | 0.0003 |
Punctate Nuclear | 0.0444 | 0.0255 | 0.0364 | 0.0798 | 0.1045 | 0.0519 | 0.1009 | 0.0699 | 0.1187 | 0.0708 | 0.1615 | 0.1352 | 0.0113 | 0.0183 | 0.0268 | 0.0302 | 0.0061 | 0.0255 |
Vacuole | 0.0083 | 0.0023 | 0.002 | 0.0003 | 0.0052 | 0.0011 | 0.0037 | 0.0009 | 0.0113 | 0.0024 | 0.0043 | 0.0009 | 0.0009 | 0.002 | 0.0018 | 0.0005 | 0.001 | 0.0006 |
Vacuole Periphery | 0.002 | 0.0004 | 0.0006 | 0.0001 | 0.003 | 0.0004 | 0.0014 | 0.0002 | 0.0029 | 0.0009 | 0.0013 | 0.0004 | 0.0003 | 0.0006 | 0.001 | 0.0005 | 0.0003 | 0.0002 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 5.9268 | 8.7799 | 7.189 | 7.5003 | 7.0257 | 4.7388 | 5.6631 | 5.3718 | 8.3042 | 7.1663 |
Translational Efficiency | 0.5989 | 0.3161 | 0.5696 | 0.6249 | 0.6102 | 1.0268 | 0.8303 | 0.7895 | 0.5457 | 0.5322 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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