Standard name
Human Ortholog
Description Homolog of mammalian ELMO (Engulfment and celL MOtility); upstream component for regulation through the small GTPase Rho5p; may form a complex with Dck1p that acts as a GEF for Rho5p; cytoplasmic protein that relocates to mitochondria under oxidative stress; implicated in mitophagy; not an essential protein

Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 1.0 0.98 0.97 0.98 0.98 0.95 0.94 0.88 0.9 0.68 0.84 0.99 0.99 0.98 0.96 0.97 0.97 0.93 0.91 0.71 0.95 0.93 0.85
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.07 0.07 0.06 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0.08 0 0 0 0 0.05 0.05 0.16 0.09 0.38 0.2 0 0 0 0 0 0 0 0 0.09 0 0 0.05
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.07 0 0 0
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 1 0 0 0 1 0 1 0 1 0 0 0 2 1 2 0 1 1 0 1 1
Bud 0 3 1 0 0 1 0 1 3 4 3 0 0 0 0 1 0 0 3 0 0 0 0
Bud Neck 0 1 0 0 1 0 4 3 4 1 1 0 1 0 0 1 2 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
Cell Periphery 0 5 0 1 5 9 3 2 5 8 8 4 2 10 25 11 22 0 0 0 0 0 0
Cytoplasm 38 253 87 88 235 207 254 152 199 121 169 129 195 249 561 520 514 57 233 67 51 185 165
Endoplasmic Reticulum 0 1 1 0 2 0 2 6 5 0 2 0 1 0 40 35 30 0 1 1 0 0 2
Endosome 0 0 1 0 1 2 0 1 2 1 1 0 0 2 6 6 6 0 0 2 0 0 1
Golgi 0 0 1 0 0 1 0 0 0 0 0 0 0 0 4 1 4 0 1 0 0 0 1
Mitochondria 3 0 0 0 1 10 14 28 19 67 40 1 0 1 8 4 2 0 5 8 0 3 9
Nucleus 0 1 1 0 2 0 2 1 2 0 1 1 0 1 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0
Nucleolus 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 2 0 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 1
SpindlePole 0 0 0 1 1 3 0 1 2 1 1 0 0 0 8 6 7 0 0 0 0 1 2
Vac/Vac Membrane 0 2 0 1 2 0 1 0 0 3 0 1 0 0 4 4 3 1 2 6 0 0 4
Unique Cell Count 38 257 90 90 240 219 269 172 221 178 200 130 196 253 585 538 531 62 255 96 54 199 195
Labelled Cell Count 41 266 93 91 250 235 282 195 243 206 228 136 199 265 659 590 592 62 255 96 54 199 195


Cytoplasm

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 4.2 5.4 5.4 7.6 6.1 5.5 4.8 4.2 4.5 4.2 4.2 5.5 5.7 5.8 6.3 5.9 5.8 4.6 5.3 5.5
Std Deviation (1e-4) 0.4 0.7 1.4 6.2 2.3 3.2 1.4 0.8 1.1 2.0 1.5 0.9 0.9 1.2 1.1 1.0 1.0 0.3 1.0 1.6
Intensity Change (Log2) 0.47 0.17 0.0 -0.19 -0.38 -0.27 -0.36 -0.39 0.01 0.06 0.08 0.2 0.13 0.09 -0.25 -0.04 0.03


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 0.5 0.7 -0.8 -0.8 -2.3 -1.9 -5.3 -3.0 1.4 1.9 1.0 -0.3 0 0.1
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 2.1 2.0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vacuole 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration -1.0989 -0.4637 -0.826 -1.0459 -0.961 -0.6306 -0.387 0.2512 0.1342 -0.384 0.2907 -0.222 -0.5866 -0.2024 -0.232 -0.2486 -0.396 -0.3104
Actin 0.0113 0.0053 0.0053 0.0003 0.0121 0.0049 0.016 0.002 0.0177 0.0018 0.0505 0.0064 0.0074 0.0004 0.0451 0.0014 0.0168 0.0083
Bud 0.0006 0.0005 0.0005 0 0.0005 0.0003 0.0023 0.0001 0.0016 0.0084 0.0021 0.0003 0.0003 0.0002 0.003 0.0004 0.0005 0.0003
Bud Neck 0.0031 0.0003 0.0009 0.0002 0.0021 0.0023 0.0013 0.0004 0.0018 0.0004 0.0015 0.002 0.0015 0.0002 0.0003 0.0007 0.0009 0.0019
Bud Periphery 0.0006 0.0004 0.0008 0 0.0006 0.0006 0.0013 0.0001 0.0017 0.0044 0.0016 0.0006 0.0005 0.0002 0.0043 0.001 0.0005 0.0004
Bud Site 0.0081 0.0038 0.0025 0 0.0025 0.0012 0.0069 0.0017 0.0094 0.0025 0.0209 0.0002 0.0047 0.0048 0.0043 0.0014 0.0111 0.0011
Cell Periphery 0.0006 0.0008 0.0005 0.0001 0.0005 0.0004 0.0007 0.0006 0.0005 0.0007 0.0002 0.0002 0.0003 0.0005 0.0003 0.0001 0.0002 0.0001
Cytoplasm 0.2674 0.4192 0.3708 0.6043 0.2674 0.4136 0.2449 0.3712 0.333 0.4078 0.4198 0.4269 0.3361 0.5498 0.4224 0.3858 0.4853 0.5856
Cytoplasmic Foci 0.035 0.0096 0.0241 0.0041 0.0512 0.0127 0.0231 0.0052 0.0164 0.0156 0.0318 0.01 0.0247 0.0089 0.0234 0.0639 0.021 0.0229
Eisosomes 0.001 0.0002 0.0003 0 0.0026 0.0003 0.0006 0.0003 0.0004 0.0003 0.0001 0.0001 0.0002 0.0001 0.0003 0.0001 0.0002 0.0001
Endoplasmic Reticulum 0.0049 0.0023 0.0042 0.0019 0.0021 0.0021 0.0032 0.0015 0.0049 0.0025 0.0023 0.0018 0.0046 0.003 0.0029 0.0069 0.003 0.0021
Endosome 0.0261 0.0006 0.0181 0.0044 0.0939 0.0138 0.0153 0.0007 0.0117 0.0075 0.0431 0.0038 0.0147 0.0043 0.0094 0.0092 0.012 0.0044
Golgi 0.0089 0.0004 0.0113 0.0001 0.0709 0.0047 0.0046 0.0003 0.0027 0.0005 0.0215 0.0015 0.0076 0.0006 0.0043 0.0025 0.0052 0.008
Lipid Particles 0.022 0.0003 0.0174 0 0.0348 0.0225 0.015 0.0002 0.0036 0.0005 0.0383 0.0025 0.0096 0.0003 0.0041 0.0172 0.0144 0.0034
Mitochondria 0.0035 0.0001 0.0108 0.0001 0.0187 0.0008 0.0069 0.0001 0.0015 0.0261 0.0034 0.0014 0.0061 0.0003 0.0114 0.0578 0.0038 0.0099
None 0.5805 0.5543 0.5208 0.3815 0.3873 0.5045 0.6353 0.6133 0.5714 0.4977 0.3306 0.5306 0.5582 0.4231 0.4414 0.4195 0.398 0.3432
Nuclear Periphery 0.0013 0.0002 0.0008 0.0005 0.0018 0.0042 0.0022 0.0002 0.0035 0.001 0.0025 0.0004 0.0056 0.0006 0.0006 0.0009 0.0006 0.0004
Nucleolus 0.0018 0.0001 0.0005 0 0.0005 0.0008 0.0018 0.0001 0.0005 0.006 0.0006 0.0001 0.0006 0.0001 0.0003 0.0008 0.0001 0.0001
Nucleus 0.0014 0.0005 0.0008 0.0008 0.0008 0.0011 0.0027 0.0006 0.002 0.0049 0.0015 0.0005 0.0022 0.001 0.001 0.0009 0.0005 0.0007
Peroxisomes 0.0148 0.0002 0.0053 0 0.0118 0.0028 0.0087 0.0001 0.0038 0.0008 0.0121 0.0086 0.0073 0.0001 0.0184 0.0107 0.023 0.0054
Punctate Nuclear 0.0044 0.0003 0.0014 0.0002 0.0182 0.0046 0.0032 0.0003 0.0101 0.005 0.0091 0.0008 0.0033 0.0005 0.0011 0.0173 0.0006 0.0013
Vacuole 0.0024 0.0005 0.0022 0.0013 0.0152 0.0012 0.0031 0.0007 0.0014 0.0045 0.0054 0.001 0.0027 0.0011 0.0014 0.0013 0.002 0.0004
Vacuole Periphery 0.0006 0 0.0006 0.0002 0.0043 0.0006 0.0007 0 0.0005 0.0012 0.001 0.0002 0.0017 0.0001 0.0003 0.0003 0.0003 0.0001

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 5.7987 8.3926 5.8613 6.2515 6.8022 4.9675 6.6139 6.9065 6.3309 7.7218
Translational Efficiency 0.6103 0.5372 0.7515 0.5492 0.6267 1.0006 0.8313 0.7432 0.7909 0.795

Hit Data

Dataset Hit
Protein Concentration
Protein Localization
Gene Expression
Translational Efficiency

Micrographs

Cell Count

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
1469 1275 1764 1569 1856 2278 180 83 3325 3553 1944 1652

Protein Abundance

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Mean 614.44 618.12 910.16 892.82 725.09 692.89 984.89 966.39 676.20 666.06 917.08 896.52
Standard Deviation 62.16 109.21 96.17 121.55 79.06 86.61 97.84 95.22 90.64 101.86 98.73 121.44
Intensity Change Log 2 0.008615 0.566848 0.539097 -0.065534 0.441803 0.414445 -0.031048 0.500509 0.472963

Localization Score (DeepLoc)

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Actin 0.000034 0.000722 0.000398 0.002332 0.000102 0.000455 0.000359 0.005366 0.000072 0.000551 0.000394 0.002485
Bud Neck 0.003870 0.005969 0.003662 0.014187 0.006849 0.025480 0.006949 0.021016 0.005533 0.018479 0.003966 0.014530
Bud Site 0.001237 0.007502 0.008948 0.081152 0.003901 0.013989 0.017322 0.080226 0.002724 0.011661 0.009723 0.081105
Cell Periphery 0.000152 0.000187 0.000147 0.000230 0.000113 0.000129 0.000287 0.000308 0.000130 0.000150 0.000160 0.000234
Cytoplasm 0.590192* 0.533357* 0.486583* 0.405624* 0.593209* 0.502366* 0.459407* 0.217765* 0.591876* 0.513487* 0.484066* 0.396186*
Cytoplasmic Foci 0.122881 0.149455 0.016665 0.079361 0.138912 0.214794* 0.043089 0.099934 0.131829 0.191347* 0.019111 0.080394
Eisosomes 0.000116 0.000091 0.000035 0.000066 0.000098 0.000151 0.000101 0.000122 0.000106 0.000130 0.000041 0.000069
Endoplasmic Reticulum 0.000652 0.001507 0.003597 0.002209 0.000769 0.000848 0.003867 0.003032 0.000718 0.001085 0.003622 0.002250
Endosome 0.003450 0.011050 0.002484 0.014783 0.003625 0.014807 0.015226 0.050149 0.003547 0.013459 0.003664 0.016560
Golgi 0.001034 0.002327 0.000090 0.004423 0.001124 0.004399 0.000168 0.012654 0.001084 0.003655 0.000097 0.004837
Lipid Particles 0.003692 0.013792 0.001436 0.002889 0.004315 0.007898 0.004402 0.009446 0.004040 0.010013 0.001710 0.003218
Mitochondria 0.002304 0.002967 0.000597 0.001346 0.002154 0.011332 0.000481 0.018769 0.002220 0.008330 0.000586 0.002221
Mitotic Spindle 0.000193 0.000822 0.004392 0.165889* 0.002054 0.003228 0.005919 0.220641* 0.001232 0.002365 0.004534 0.168640*
None 0.005106 0.022164 0.002516 0.002011 0.002274 0.001292 0.002180 0.000975 0.003526 0.008782 0.002485 0.001959
Nuclear Periphery 0.000336 0.001190 0.002053 0.000809 0.000318 0.000382 0.001410 0.000680 0.000326 0.000672 0.001994 0.000802
Nuclear Periphery Foci 0.000182 0.001905 0.001686 0.005987 0.000214 0.000410 0.007281 0.013086 0.000200 0.000946 0.002204 0.006343
Nucleolus 0.000654 0.003986 0.000260 0.000924 0.000474 0.000879 0.000531 0.000780 0.000554 0.001994 0.000285 0.000917
Nucleus 0.244755* 0.191785* 0.398425* 0.066001 0.207620* 0.124616 0.169751* 0.039806 0.224027* 0.148720* 0.377252* 0.064685
Peroxisomes 0.001548 0.002860 0.000231 0.025258 0.002342 0.007515 0.000964 0.039668 0.001991 0.005845 0.000299 0.025982
Vacuole 0.017184 0.044825 0.065611 0.122618 0.029033 0.063391 0.259934* 0.156464 0.023798 0.056728 0.083604 0.124318
Vacuole Periphery 0.000428 0.001537 0.000185 0.001902 0.000499 0.001637 0.000373 0.009113 0.000468 0.001601 0.000203 0.002264

Localization Changes (T-score)

R1 R2 R1 & R2
UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14
Actin -1.37 -2.95 -7.59 -1.75 -4.70 -2.11 -5.16 -1.90 -1.66 -1.69 -2.29 -2.92 -7.61 -3.94 -5.06
Bud Neck -2.51 -0.74 -11.50 -8.95 -12.04 -12.32 0.88 -1.27 2.73 -1.51 -12.76 1.93 -10.26 2.76 -11.95
Bud Site -4.65 -5.35 -17.55 -14.59 -14.22 -6.86 -2.38 -4.13 -3.17 -3.05 -8.53 -4.82 -17.55 -14.12 -14.50
Cell Periphery -1.72 -0.84 -2.87 0.07 -2.26 -2.08 -5.01 -2.81 -2.48 0.33 -2.15 -4.67 -5.79 -3.20 -1.76
Cytoplasm 6.20 18.10 26.59 18.09 9.73 11.82 9.65 12.04 8.85 4.07 13.26 22.40 31.33 21.12 10.16
Cytoplasmic Foci -4.71 30.35 7.43 10.96 -19.33 -13.42 17.64 4.27 9.53 -2.79 -14.42 41.99 10.67 22.29 -19.17
Eisosomes 3.52 14.84 7.94 3.12 -9.09 -4.40 -1.39 -1.89 0.45 -1.26 -3.01 15.51 6.71 6.36 -7.98
Endoplasmic Reticulum -1.81 -9.42 -3.89 -3.45 9.63 -0.62 -8.86 -4.25 -4.08 1.77 -1.70 -15.46 -6.97 -7.18 9.90
Endosome -7.42 0.97 -10.29 -2.72 -13.07 -13.50 -2.68 -3.61 -1.66 -1.90 -15.01 -0.37 -12.25 -1.28 -11.95
Golgi -2.09 2.81 -1.80 0.23 -4.11 -6.79 5.31 -1.20 0.17 -1.61 -6.67 5.48 -2.19 2.37 -4.37
Lipid Particles -7.82 6.49 -2.28 7.21 -10.52 -5.35 -0.29 -1.82 0.13 -1.71 -9.59 6.85 -1.80 8.68 -9.96
Mitochondria -0.73 1.99 1.61 4.76 -2.07 -6.87 3.21 -0.84 1.68 -1.36 -6.59 3.33 2.01 8.64 -2.41
Mitotic Spindle -2.12 -4.13 -22.90 -22.81* -22.21 -1.11 -2.14 -4.81 -4.77 -4.60 -1.73 -3.24 -23.23 -23.06 -22.66
None -7.21 3.50 2.90 8.64 -2.05 3.95 -0.39 0.61 -1.08 0.76 -5.85 2.97 1.91 7.20 -1.83
Nuclear Periphery -5.10 -24.94 -15.27 -3.01 8.17 -1.89 -10.41 -6.12 -5.62 1.47 -5.27 -31.05 -18.75 -10.95 8.14
Nuclear Periphery Foci -3.98 -13.46 -11.92 -9.70 -10.01 -1.76 -2.67 -3.15 -3.12 -1.05 -4.35 -6.99 -12.32 -11.51 -9.10
Nucleolus -6.19 3.81 -5.32 1.15 -6.17 -3.69 -0.66 -1.57 -0.44 -1.05 -6.97 3.46 -5.64 -2.20 -6.18
Nucleus 6.60 -20.85 28.18 17.41 47.23 16.13 3.54 13.54 6.09 6.08 17.07 -24.05 33.71 17.49 45.79
Peroxisomes -2.72 3.29 -9.23 -8.43 -10.39 -5.82 2.67 -2.47 -1.73 -2.70 -6.66 4.77 -9.33 -6.70 -10.72
Vacuole -11.19 -21.54 -28.48 -22.09 -12.67 -15.88 -15.00 -9.17 -8.01 0.98 -20.16 -23.00 -28.75 -22.59 -10.06
Vacuole Periphery -4.90 2.08 -1.48 2.17 -2.56 -7.90 2.63 -1.06 -0.48 -1.18 -9.10 4.24 -1.71 2.43 -2.80
Standard name
Human Ortholog
Description Homolog of mammalian ELMO (Engulfment and celL MOtility); upstream component for regulation through the small GTPase Rho5p; may form a complex with Dck1p that acts as a GEF for Rho5p; cytoplasmic protein that relocates to mitochondria under oxidative stress; implicated in mitophagy; not an essential protein
Localization
Cell Percentages cytoplasm (46%)
Cell Cycle Regulation No
Subcompartmental Group cytoplasm-9

Lmo1

Lmo1


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)

Molecular Function (Gene Ontology)

Cellular Component (Gene Ontology)


Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Lmo1-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available