Standard name
Human Ortholog
Description Protein that regulates ubiquitination of Rsp5p; has a WW domain consensus motif of PPPSY (residues 131-135) that mediates binding of Rsp5p to Ubp2p; contains an UBA domain; relative distribution to the nucleus increases upon DNA replication stress

Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 0.99 0.98 0.98 0.84 0.83 0.87 0.84 0.73 0.67 0.7 0.64 0.97 0.82 0.73 0.86 0.87 0.82 0.97 0.91 0.83 0.88 0.86 0.81
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0 0 0 0 0 0.05 0.06 0.14 0.09 0.24 0.13 0 0 0 0 0 0 0 0 0 0 0 0
Nucleus 0 0 0 0 0 0 0 0.05 0 0 0 0 0 0 0.06 0 0.05 0 0 0 0 0.07 0.06
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0 0 0 0.16 0.24 0.09 0.12 0.11 0.27 0.09 0.23 0.05 0.3 0.4 0.19 0.19 0.24 0 0 0 0 0 0
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
Bud 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 1 1 0 1 1 3 1 7 3 11 0 0 0 1 2 3 0 0 0 0 0 0
Cytoplasm 121 252 100 119 161 172 230 106 184 117 166 154 178 175 162 243 163 113 235 99 73 139 174
Endoplasmic Reticulum 1 5 0 1 0 0 0 1 0 2 5 1 2 0 5 7 4 0 1 3 0 0 1
Endosome 0 0 0 2 0 0 2 0 0 0 0 0 1 5 0 0 0 0 1 0 0 0 4
Golgi 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 2 3 0 1 0 0 0 0
Mitochondria 0 0 0 2 1 9 16 20 24 41 35 0 0 0 2 1 1 0 0 0 0 0 2
Nucleus 0 1 2 2 2 2 4 7 8 7 9 6 6 6 12 11 9 1 8 4 3 11 13
Nuclear Periphery 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 1
Nucleolus 0 0 0 2 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
SpindlePole 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
Vac/Vac Membrane 0 2 0 23 46 18 33 16 75 15 60 8 66 95 35 54 48 0 4 4 0 4 8
Unique Cell Count 122 258 102 142 195 197 273 145 275 168 261 159 217 239 189 279 199 117 258 119 84 162 216
Labelled Cell Count 122 261 103 151 211 204 291 153 300 186 289 169 253 281 218 320 231 117 258 119 84 162 216


Cytoplasm, Nucleus

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 8.9 11.7 10.6 9.9 10.4 9.4 9.1 8.1 8.8 7.9 8.4 10.3 10.2 10.3 15.8 16.5 16.3 7.6 9.3 10.4
Std Deviation (1e-4) 1.0 1.4 1.2 1.7 1.9 2.1 1.5 1.6 1.8 1.7 1.9 1.5 1.4 1.5 3.6 3.4 3.2 1.2 1.4 1.5
Intensity Change (Log2) -0.09 -0.02 -0.17 -0.22 -0.39 -0.26 -0.43 -0.33 -0.04 -0.05 -0.04 0.58 0.64 0.62 -0.48 -0.19 -0.03


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm -3.6 -3.9 -3.1 -3.7 -5.2 -6.2 -5.7 -6.7 -0.6 -4.0 -5.3 -3.3 -3.2 -4.0
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0 0 0 0 3.9 3.1 5.4 3.9 0 0 0 0 0 0
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vacuole 4.3 5.3 3.1 3.7 3.5 5.9 3.1 5.3 0 6.3 7.5 4.6 4.8 5.4

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration 2.974 4.0075 3.2648 3.3223 2.4293 3.4171 3.6951 5.415 4.4511 4.4928 3.9897 4.4934 4.3116 4.8477 4.5583 4.1918 4.2248 4.5923
Actin 0.009 0.0002 0.022 0.0001 0.0022 0.0007 0.0124 0.0002 0.0009 0.0004 0.005 0.0008 0.0474 0.0009 0.002 0.0011 0.0013 0.0075
Bud 0.0006 0.0001 0.0006 0.0001 0.0002 0.0001 0.0007 0.0001 0.0003 0.0002 0.0001 0.0001 0.0004 0.0002 0.0002 0.0002 0.0002 0.0001
Bud Neck 0.0021 0.0003 0.001 0.0005 0.0008 0.001 0.0042 0.0002 0.0011 0.0011 0.0007 0.0014 0.0013 0.0003 0.0006 0.0007 0.0015 0.0013
Bud Periphery 0.0016 0 0.0003 0 0.0002 0 0.0005 0 0.0004 0.0001 0 0 0.0003 0.0001 0.0001 0.0001 0.0001 0.0001
Bud Site 0.0025 0.0004 0.0021 0.0001 0.0004 0.0001 0.0035 0.0003 0.002 0.0003 0.0002 0.0001 0.0009 0.0011 0.0004 0.0004 0.0012 0.0001
Cell Periphery 0.0006 0 0.0001 0 0.0001 0 0.0002 0 0.0001 0 0 0 0.0001 0 0 0 0 0
Cytoplasm 0.7865 0.9217 0.7615 0.7545 0.7387 0.8352 0.7542 0.9282 0.8117 0.699 0.8602 0.8553 0.7969 0.9111 0.7934 0.7335 0.8549 0.8313
Cytoplasmic Foci 0.0173 0.0037 0.0278 0.0022 0.0105 0.016 0.0228 0.0022 0.014 0.0042 0.0126 0.0125 0.0218 0.0068 0.0063 0.0038 0.0239 0.0074
Eisosomes 0.0001 0 0.0004 0 0.0001 0 0.0002 0 0 0 0 0 0.0003 0 0 0 0 0
Endoplasmic Reticulum 0.0061 0.0018 0.0028 0.0014 0.004 0.0036 0.0052 0.0019 0.0027 0.0014 0.0031 0.0025 0.0036 0.0017 0.006 0.0019 0.003 0.0048
Endosome 0.0251 0.0023 0.0372 0.0014 0.0395 0.0113 0.0262 0.0011 0.0127 0.0225 0.0231 0.0119 0.0129 0.0022 0.0105 0.0042 0.009 0.0053
Golgi 0.0086 0.0001 0.0084 0 0.017 0.0007 0.0058 0.0001 0.0017 0.0154 0.0163 0.0032 0.0065 0.0005 0.002 0.001 0.0051 0.0009
Lipid Particles 0.0076 0 0.0044 0 0.0249 0.0002 0.0081 0 0.0048 0.0003 0.0035 0.0069 0.004 0.0001 0.0032 0.0021 0.0145 0.0017
Mitochondria 0.0014 0.0001 0.0058 0.0002 0.1047 0.0003 0.0055 0.0001 0.0018 0.0048 0.0025 0.0016 0.0015 0.0004 0.0009 0.0191 0.0029 0.0008
None 0.0114 0.004 0.0197 0.0016 0.0034 0.0043 0.0533 0.0122 0.0183 0.004 0.0056 0.0144 0.0064 0.0043 0.0093 0.004 0.0039 0.0033
Nuclear Periphery 0.0125 0.0035 0.0069 0.0048 0.0062 0.0076 0.0081 0.0028 0.0058 0.0069 0.0046 0.004 0.0076 0.0036 0.0093 0.0088 0.0042 0.0068
Nucleolus 0.0004 0.0001 0.0002 0.0001 0.0002 0.0001 0.0024 0 0.0004 0.0004 0.0001 0.0001 0.0002 0.0001 0.0001 0.0002 0.0007 0.0002
Nucleus 0.0932 0.0595 0.0833 0.2316 0.0319 0.112 0.0673 0.0491 0.1049 0.2313 0.0516 0.0743 0.0718 0.0585 0.1505 0.192 0.0367 0.1192
Peroxisomes 0.002 0 0.0102 0 0.0064 0.0025 0.0088 0 0.0076 0.0002 0.0063 0.0066 0.0114 0.0052 0.0006 0.0186 0.0316 0.0023
Punctate Nuclear 0.0023 0.0013 0.0017 0.0009 0.0032 0.0023 0.0054 0.0007 0.0054 0.0061 0.0023 0.0026 0.003 0.0019 0.003 0.0049 0.0032 0.0056
Vacuole 0.0075 0.0008 0.0027 0.0004 0.0037 0.0016 0.0045 0.0006 0.0028 0.0009 0.0017 0.0011 0.0012 0.0009 0.0012 0.0028 0.0014 0.0011
Vacuole Periphery 0.0015 0.0001 0.0009 0.0001 0.0016 0.0004 0.0009 0.0001 0.0007 0.0004 0.0005 0.0003 0.0004 0.0002 0.0004 0.0006 0.0004 0.0003

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 12.3148 16.6353 23.236 22.2012 25.5466 27.8981 26.2193 28.7147 29.6291 23.9189
Translational Efficiency 1.5526 1.0716 0.7576 0.9812 0.8195 0.696 0.7446 0.7249 0.6948 0.7412

Hit Data

Dataset Hit
Protein Concentration
Protein Localization
Gene Expression
Translational Efficiency

Micrographs

Cell Count

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
2100 1240 263 1542 1682 161 187 37 3782 1401 450 1579

Protein Abundance

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Mean 906.06 953.04 1592.18 1208.87 948.82 964.23 1331.10 1286.99 925.08 954.33 1483.69 1210.70
Standard Deviation 113.92 141.65 199.90 160.64 134.09 117.03 163.69 313.19 125.11 139.09 225.93 166.25
Intensity Change Log 2 0.072930 0.813325 0.415981 0.023243 0.488413 0.439795 0.047728 0.656262 0.428211

Localization Score (DeepLoc)

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Actin 0.000104 0.000784 0.000926 0.003388 0.000214 0.000885 0.001106 0.001051 0.000153 0.000796 0.001001 0.003334
Bud Neck 0.001059 0.002480 0.004928 0.013200 0.001170 0.005221 0.002643 0.006774 0.001109 0.002795 0.003978 0.013049
Bud Site 0.002142 0.005994 0.002293 0.038025 0.003240 0.022964 0.007018 0.138356* 0.002630 0.007944 0.004257 0.040376
Cell Periphery 0.000052 0.000088 0.000223 0.000221 0.000086 0.000160 0.000304 0.000711 0.000067 0.000096 0.000256 0.000232
Cytoplasm 0.776352* 0.545966* 0.133914* 0.217753* 0.716861* 0.430294* 0.293269* 0.059913 0.749894* 0.532674* 0.200135* 0.214054*
Cytoplasmic Foci 0.037830 0.025994 0.001461 0.010742 0.044836 0.114698 0.014627 0.106684 0.040946 0.036187 0.006932 0.012990
Eisosomes 0.000012 0.000023 0.000015 0.000024 0.000016 0.000076 0.000077 0.000041 0.000014 0.000029 0.000041 0.000025
Endoplasmic Reticulum 0.000603 0.002417 0.002710 0.003555 0.002226 0.004036 0.007110 0.004095 0.001325 0.002603 0.004539 0.003568
Endosome 0.000985 0.002604 0.000779 0.012580 0.001962 0.011554 0.004702 0.114788 0.001419 0.003633 0.002409 0.014975
Golgi 0.000334 0.001353 0.000227 0.023583 0.000488 0.003969 0.000156 0.061953 0.000402 0.001654 0.000198 0.024482
Lipid Particles 0.000402 0.000902 0.000822 0.000890 0.000882 0.011412 0.002617 0.010529 0.000616 0.002110 0.001568 0.001116
Mitochondria 0.000977 0.002060 0.001296 0.007558 0.001492 0.014527 0.000930 0.019493 0.001206 0.003493 0.001144 0.007838
Mitotic Spindle 0.001013 0.004263 0.003670 0.128030* 0.003843 0.017798 0.003234 0.073076 0.002272 0.005818 0.003489 0.126742*
None 0.008190 0.004888 0.004242 0.009217 0.004704 0.001902 0.003356 0.004140 0.006640 0.004545 0.003874 0.009098
Nuclear Periphery 0.000139 0.000728 0.001896 0.002869 0.000338 0.000938 0.001507 0.006195 0.000228 0.000752 0.001734 0.002947
Nuclear Periphery Foci 0.001200 0.001651 0.000946 0.003427 0.004200 0.002528 0.006317 0.007114 0.002534 0.001751 0.003178 0.003513
Nucleolus 0.000305 0.000371 0.000276 0.001443 0.000298 0.001934 0.000352 0.000376 0.000302 0.000551 0.000308 0.001418
Nucleus 0.143416* 0.350860* 0.805830* 0.436219* 0.181726* 0.200526* 0.417754* 0.185315* 0.160454* 0.333584* 0.644563* 0.430340*
Peroxisomes 0.000252 0.001437 0.000107 0.000809 0.000308 0.006301 0.000279 0.002838 0.000277 0.001996 0.000178 0.000856
Vacuole 0.024190 0.044636 0.033300 0.065136 0.030738 0.146151 0.232420* 0.144567 0.027102 0.056302 0.116045 0.066998
Vacuole Periphery 0.000443 0.000502 0.000139 0.021328 0.000370 0.002125 0.000221 0.051990 0.000411 0.000689 0.000173 0.022047

Localization Changes (T-score)

R1 R2 R1 & R2
UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14
Actin -1.89 -12.60 -4.12 -1.03 1.47 -4.99 -4.13 -4.48 -1.29 0.79 -1.98 -10.39 -4.02 -1.11 0.97
Bud Neck -5.82 -13.38 -14.19 -10.95 -1.59 -4.51 -4.76 -4.68 -1.71 -2.79 -6.96 -13.27 -14.40 -10.78 -4.73
Bud Site -3.27 -6.08 -7.81 -4.55 -5.98 -2.62 -2.22 -1.13 -0.53 -0.95 -3.84 -3.77 -7.37 -3.75 -4.62
Cell Periphery -5.30 -13.02 -11.94 -7.47 8.05 -3.90 -4.01 -2.80 -2.10 -0.35 -4.57 -10.47 -11.04 -7.29 6.27
Cytoplasm 30.15 74.27* 97.34* 36.36 -10.64 14.31 28.95 32.89 10.75 4.67 30.69 64.00 100.86* 36.81 -4.32
Cytoplasmic Foci 5.05 23.52 21.79 12.07 -4.02 -5.12 14.49 1.34 4.34 -1.14 2.33 26.19 27.61 13.76 0.89
Eisosomes -7.77 -9.06 -15.13 -3.97 -0.05 -8.40 -10.24 -4.72 1.00 0.67 -10.07 -12.66 -16.16 -1.08 5.37
Endoplasmic Reticulum -11.94 -12.28 -18.00 -4.19 2.53 -2.83 -7.80 -3.11 -1.09 1.46 -8.59 -12.65 -13.91 -3.52 5.74
Endosome -3.75 -3.85 -4.42 -0.08 -2.39 -4.28 -5.44 -1.75 -1.03 -1.56 -4.62 -6.19 -3.55 0.63 -0.67
Golgi -1.73 -1.00 -3.14 -2.18 -3.07 -1.74 2.49 -1.41 -1.11 -1.45 -2.14 1.19 -3.29 -2.21 -3.37
Lipid Particles -6.46 -9.35 -15.65 -6.03 2.10 -1.52 -7.75 -2.18 0.89 -0.87 -2.08 -11.89 -12.49 0.33 4.02
Mitochondria -0.93 -2.20 -2.92 -1.11 -1.86 -1.50 0.60 -0.88 0.84 -1.02 -1.54 -0.86 -2.81 -0.02 -2.67
Mitotic Spindle -2.54 -3.51 -10.30 -9.22 -8.89 -1.44 -0.84 -1.69 -1.20 -1.55 -2.03 -2.16 -10.04 -8.89 -8.49
None 5.77 7.78 -2.05 -9.75 -11.81 4.59 3.11 -1.39 -1.89 -1.75 5.25 8.07 -5.37 -10.60 -13.00
Nuclear Periphery -17.00* -16.74 -26.15 -20.59 -1.21 -5.21 -11.69 -3.57 -2.97 -1.87 -16.21 -19.91 -25.80 -20.69 -4.17
Nuclear Periphery Foci -3.78 -3.08 -3.05 0.79 0.80 2.10 -2.79 -0.01 -1.24 1.83 1.95 -3.36 2.82 1.11 6.07
Nucleolus -1.26 -2.39 -2.00 -1.77 -1.64 -1.20 -0.01 -2.12 1.00 -2.37 -1.59 -1.75 -2.03 -1.15 -1.82
Nucleus -27.20 -45.95 -52.11* -18.86 14.03 -1.17 -10.80 -4.22 -3.67 0.30 -24.63 -31.80 -51.04 -20.97 4.41
Peroxisomes -2.47 0.89 0.17 2.51 -1.00 -3.35 0.67 -1.18 3.02 -1.38 -3.57 1.13 0.41 3.64 -0.73
Vacuole -10.40 -8.50 -23.05 -13.41 -5.03 -9.30 -12.42 -5.49 -1.87 0.24 -12.56 -13.66 -23.09 -11.26 2.28
Vacuole Periphery -0.06 1.33 -3.10 -3.09 -3.36 -2.21 1.90 -1.09 -0.95 -1.11 -1.10 1.94 -3.33 -3.11 -3.53
Standard name
Human Ortholog
Description Protein that regulates ubiquitination of Rsp5p; has a WW domain consensus motif of PPPSY (residues 131-135) that mediates binding of Rsp5p to Ubp2p; contains an UBA domain; relative distribution to the nucleus increases upon DNA replication stress
Localization
Cell Percentages cytoplasm (98%)
Cell Cycle Regulation No
Subcompartmental Group cytoplasm-9

Rup1

Rup1


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)

Molecular Function (Gene Ontology)

Cellular Component (Gene Ontology)


Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Rup1-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available